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A1S4W7 (A1S4W7_SHEAM) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Glutamine--tRNA ligase HAMAP-Rule MF_00126

EC=6.1.1.18 HAMAP-Rule MF_00126
Alternative name(s):
Glutaminyl-tRNA synthetase HAMAP-Rule MF_00126
Gene names
Name:glnS HAMAP-Rule MF_00126
Ordered Locus Names:Sama_1216 EMBL ABL99423.1
OrganismShewanella amazonensis (strain ATCC BAA-1098 / SB2B) [Complete proteome] [HAMAP] EMBL ABL99423.1
Taxonomic identifier326297 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length555 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-glutamine + tRNA(Gln) = AMP + diphosphate + L-glutaminyl-tRNA(Gln). HAMAP-Rule MF_00126 SAAS SAAS004514

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00126 SAAS SAAS004514

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00126 SAAS SAAS004514.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. HAMAP-Rule MF_00126 RuleBase RU003489

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Motif36 – 4611"HIGH" region By similarity HAMAP-Rule MF_00126
Motif273 – 2775"KMSKS" region By similarity HAMAP-Rule MF_00126

Sites

Binding site2761ATP By similarity HAMAP-Rule MF_00126

Sequences

Sequence LengthMass (Da)Tools
A1S4W7 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: 6CD13A8FDBEBA115

FASTA55563,731
        10         20         30         40         50         60 
MSHVDNEVRP SNFIRNIIDE DLASGKHTSV HTRFPPEPNG YLHIGHAKSI CLNFGIAEDY 

        70         80         90        100        110        120 
KGQCNLRFDD TNPEKEDIDY VNSIQEDVKW LGFQWDGEVR YSSNYFDELY GYAVELINKG 

       130        140        150        160        170        180 
LAYVCFLNAE ETREYRGTLK EPGRNSPYRD TSPEENLALF EKMRDGGFKE GECVLRAKID 

       190        200        210        220        230        240 
MASPFMCMRD PVIYRVKFAH HHQTGDKWCI YPMYDFTHCI SDALENITHS LCTLEFQDNR 

       250        260        270        280        290        300 
RLYDWVLDNL NDFQAPNRTR QYEFSRLNLE YTLMSKRKLN DLVVRGLVSG WDDPRMPTIA 

       310        320        330        340        350        360 
GLRRRGYTPA SIREFCQRIG VTKQDNLVEV GMLEACIRED LNENAPRAMA VIRPIKVIIE 

       370        380        390        400        410        420 
NFTAPELEYV KAPVHPNLEE MGERELAFGR EIYIDAADFR EEANKQYKRL VLGKEVRLRN 

       430        440        450        460        470        480 
AYVIRAERCE KDAEGNVTTV YCTYDPETLG QNPSDGRKVK GVIHWVEATT ALPAEFRLYD 

       490        500        510        520        530        540 
RLFIDANPAA AETVDEVLNP ASLEVVHGFA EAPLANAKAS QAYQFEREGY FCADSKDSAP 

       550 
GKLVFNLTVA LRESF 

« Hide

References

[1]"Complete sequence of Shewanella amazonensis SB2B."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Fredrickson J., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-1098 / SB2B.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000507 Genomic DNA. Translation: ABL99423.1.
RefSeqYP_927093.1. NC_008700.1.

3D structure databases

ProteinModelPortalA1S4W7.
SMRA1S4W7. Positions 11-554.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING326297.Sama_1216.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABL99423; ABL99423; Sama_1216.
GeneID4603468.
KEGGsaz:Sama_1216.
PATRIC23451077. VBISheAma74963_1259.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0008.
HOGENOMHOG000259232.
KOK01886.
OMASREIYID.
OrthoDBEOG6DRPF7.

Enzyme and pathway databases

BioCycSAMA326297:GH0T-1260-MONOMER.

Family and domain databases

Gene3D1.10.1160.10. 1 hit.
2.40.240.10. 2 hits.
3.40.50.620. 2 hits.
HAMAPMF_00126. Gln_tRNA_synth.
InterProIPR001412. aa-tRNA-synth_I_CS.
IPR004514. Gln-tRNA-synth.
IPR022861. Gln_tRNA_ligase_bac.
IPR000924. Glu/Gln-tRNA-synth.
IPR020061. Glu/Gln-tRNA-synth_Ib_a-bdl.
IPR020058. Glu/Gln-tRNA-synth_Ib_cat-dom.
IPR020059. Glu/Gln-tRNA-synth_Ib_codon-bd.
IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PANTHERPTHR10119. PTHR10119. 1 hit.
PfamPF00749. tRNA-synt_1c. 1 hit.
PF03950. tRNA-synt_1c_C. 1 hit.
[Graphical view]
PRINTSPR00987. TRNASYNTHGLU.
SUPFAMSSF50715. SSF50715. 1 hit.
TIGRFAMsTIGR00440. glnS. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA1S4W7_SHEAM
AccessionPrimary (citable) accession number: A1S4W7
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: June 11, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)