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A1S4V1 (A1S4V1_SHEAM) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Pyridoxal-dependent decarboxylase EMBL ABL99407.1
Gene names
Ordered Locus Names:Sama_1200
OrganismShewanella amazonensis (strain ATCC BAA-1098 / SB2B) [Complete proteome] [HAMAP] EMBL ABL99407.1
Taxonomic identifier326297 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella ›

Protein attributes

Sequence length560 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000382
   Molecular functionLyase RuleBase RU000382
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarboxylic acid metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncarboxy-lyase activity

Inferred from electronic annotation. Source: InterPro

pyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A1S4V1 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: 4BF4028235789912

FASTA56061,510
        10         20         30         40         50         60 
MPPAVHKTAR RDEMTEKHLR KATASEDNLL RIFTVPEAAD STLGRIEQQL SADLAGFLQD 

        70         80         90        100        110        120 
NIAALEQPLS DIEDHFYSVE VPPQPQFVSD YVDDIMAHLV AQSVHTAAPS FIGHMTSALP 

       130        140        150        160        170        180 
YFLLPLSKLM VGLNQNLVKI ETSKAFTPME RQVLGMMHHL IYGREKDFYQ GFLHSASHAL 

       190        200        210        220        230        240 
GAFCSGGTVA NITALWIARN QLLKARGNFR GVTREGLHKA LKHYGWDDLA ILVSERGHYS 

       250        260        270        280        290        300 
LGKAADLLGI GRDNIISVPV DAHNKVDIDA MRVAAAQLQA RNIRVMAIVG VAGTTETGNV 

       310        320        330        340        350        360 
DPLAEMAALA KEIDCHFHVD AAWGGATLLS EKYRYLLSGI ELADSVTIDA HKQMYVPMGA 

       370        380        390        400        410        420 
GMVLFKNPSF ASAIEHHAEY ILRQGSKDLG SQTLEGSRPG MAMLVHACLN IIGREGYEIL 

       430        440        450        460        470        480 
INGSLERARF FAGLIEAQTD FELISEPELC LLTYRYVPAK VRLALAQAVA QHDKDKLDAI 

       490        500        510        520        530        540 
GSLLDDLTRA IQKTQREQGK SFVSRTRITP KRYGNDKRTV FRVVLANPLT TEAILAAVLE 

       550        560 
EQRALASGET EILQALDALC

« Hide

References

[1]"Complete sequence of Shewanella amazonensis SB2B."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Fredrickson J., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-1098 / SB2B.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000507 Genomic DNA. Translation: ABL99407.1.
RefSeqYP_927077.1. NC_008700.1.

3D structure databases

ProteinModelPortalA1S4V1.
ModBaseSearch...

Protein-protein interaction databases

STRING326297.Sama_1200.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABL99407; ABL99407; Sama_1200.
GeneID4603452.
KEGGsaz:Sama_1200.
PATRIC23451039. VBISheAma74963_1240.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000282553.
KOK01580.
OMACHFHVDA.
ProtClustDBCLSK874231.

Enzyme and pathway databases

BioCycSAMA326297:GH0T-1244-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA1S4V1_SHEAM
AccessionPrimary (citable) accession number: A1S4V1
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: May 29, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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