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A1S4U5

- GH109_SHEAM

UniProt

A1S4U5 - GH109_SHEAM

Protein

Glycosyl hydrolase family 109 protein

Gene

Sama_1194

Organism
Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 50 (01 Oct 2014)
      Sequence version 1 (06 Feb 2007)
      Previous versions | rss
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    Functioni

    Glycosidase.By similarity

    Cofactori

    Binds 1 NAD+ per subunit. The NAD cannot dissociate By similarity.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei84 – 841NADBy similarity
    Binding sitei112 – 1121NAD; via carbonyl oxygenBy similarity
    Binding sitei182 – 1821NADBy similarity
    Binding sitei211 – 2111SubstrateBy similarity
    Binding sitei230 – 2301SubstrateBy similarity
    Binding sitei242 – 2421NADBy similarity
    Binding sitei324 – 3241SubstrateBy similarity

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi62 – 632NADBy similarity
    Nucleotide bindingi133 – 1364NADBy similarity
    Nucleotide bindingi153 – 1542NADBy similarity

    GO - Molecular functioni

    1. hydrolase activity, acting on glycosyl bonds Source: UniProtKB-KW
    2. oxidoreductase activity Source: InterPro

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Keywords - Ligandi

    NAD

    Enzyme and pathway databases

    BioCyciSAMA326297:GH0T-1238-MONOMER.

    Protein family/group databases

    CAZyiGH109. Glycoside Hydrolase Family 109.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glycosyl hydrolase family 109 protein (EC:3.2.1.-)
    Gene namesi
    Ordered Locus Names:Sama_1194
    OrganismiShewanella amazonensis (strain ATCC BAA-1098 / SB2B)
    Taxonomic identifieri326297 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    ProteomesiUP000009175: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 3333Tat-type signalPROSITE-ProRule annotationAdd
    BLAST
    Chaini34 – 455422Glycosyl hydrolase family 109 proteinPRO_5000205145Add
    BLAST

    Post-translational modificationi

    Predicted to be exported by the Tat system. The position of the signal peptide cleavage has not been experimentally proven.

    Interactioni

    Protein-protein interaction databases

    STRINGi326297.Sama_1194.

    Structurei

    3D structure databases

    ProteinModelPortaliA1S4U5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni242 – 2454Substrate bindingBy similarity

    Sequence similaritiesi

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG0673.
    HOGENOMiHOG000252553.
    OMAiCYGRDEL.
    OrthoDBiEOG61P6MK.

    Family and domain databases

    Gene3Di3.40.50.720. 2 hits.
    InterProiIPR016040. NAD(P)-bd_dom.
    IPR000683. Oxidoreductase_N.
    IPR006311. TAT_signal.
    IPR019546. TAT_signal_bac_arc.
    [Graphical view]
    PfamiPF01408. GFO_IDH_MocA. 1 hit.
    PF10518. TAT_signal. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR01409. TAT_signal_seq. 1 hit.
    PROSITEiPS51318. TAT. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    A1S4U5-1 [UniParc]FASTAAdd to Basket

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    MAGIDRRGFL KASMASVAAA ALAGCASQQG TSATPKAAGK SVMGLVVPKM    50
    AEVRVGLIGV GERGVGFIHH FNNIEGARIT AICDTDPLVI SRAQKIMADY 100
    GRSQPAYYSK GQQAYLDLVA REDVDIVVIA TPWALHHPMA KAAMLAGKHA 150
    FVEVPMGMTI EELWDLVDTA ELTQRNCMMM ENVCYGRDEL MVLNMVRQGL 200
    FGELLHGEAA YIHELRWQMK ELDRKTGSWR TGYHAQINGN LYPTHGLGPV 250
    AQYMNINRGD RFDYLSSMSS PALGRAAYAQ REFPKDHQRN QLNYICGDMN 300
    TSLIKTVKGR TIMVQHDTTT PRPYSRHNLI QGTNGVFAGF PNRIALENHG 350
    RGSFHEWDQD MEHWYGKYDH PLWTRMGREA EQNGGHGGMD FLMCWRMIYC 400
    LRNGEPLDQD VYDGAAWSAV QPLSAASVAD RGNSRDFPDF TRGVWQSATP 450
    LGIVE 455
    Length:455
    Mass (Da):50,618
    Last modified:February 6, 2007 - v1
    Checksum:i420B511BBCB00967
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000507 Genomic DNA. Translation: ABL99401.1.
    RefSeqiWP_011759310.1. NC_008700.1.
    YP_927071.1. NC_008700.1.

    Genome annotation databases

    EnsemblBacteriaiABL99401; ABL99401; Sama_1194.
    GeneIDi4603446.
    KEGGisaz:Sama_1194.
    PATRICi23451027. VBISheAma74963_1234.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000507 Genomic DNA. Translation: ABL99401.1 .
    RefSeqi WP_011759310.1. NC_008700.1.
    YP_927071.1. NC_008700.1.

    3D structure databases

    ProteinModelPortali A1S4U5.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 326297.Sama_1194.

    Protein family/group databases

    CAZyi GH109. Glycoside Hydrolase Family 109.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABL99401 ; ABL99401 ; Sama_1194 .
    GeneIDi 4603446.
    KEGGi saz:Sama_1194.
    PATRICi 23451027. VBISheAma74963_1234.

    Phylogenomic databases

    eggNOGi COG0673.
    HOGENOMi HOG000252553.
    OMAi CYGRDEL.
    OrthoDBi EOG61P6MK.

    Enzyme and pathway databases

    BioCyci SAMA326297:GH0T-1238-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.720. 2 hits.
    InterProi IPR016040. NAD(P)-bd_dom.
    IPR000683. Oxidoreductase_N.
    IPR006311. TAT_signal.
    IPR019546. TAT_signal_bac_arc.
    [Graphical view ]
    Pfami PF01408. GFO_IDH_MocA. 1 hit.
    PF10518. TAT_signal. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR01409. TAT_signal_seq. 1 hit.
    PROSITEi PS51318. TAT. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-1098 / SB2B.

    Entry informationi

    Entry nameiGH109_SHEAM
    AccessioniPrimary (citable) accession number: A1S4U5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 2, 2008
    Last sequence update: February 6, 2007
    Last modified: October 1, 2014
    This is version 50 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3