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A1S4U5

- GH109_SHEAM

UniProt

A1S4U5 - GH109_SHEAM

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Protein

Glycosyl hydrolase family 109 protein

Gene
Sama_1194
Organism
Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Glycosidase By similarity.

Cofactori

Binds 1 NAD+ per subunit. The NAD cannot dissociate By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei84 – 841NAD By similarity
Binding sitei112 – 1121NAD; via carbonyl oxygen By similarity
Binding sitei182 – 1821NAD By similarity
Binding sitei211 – 2111Substrate By similarity
Binding sitei230 – 2301Substrate By similarity
Binding sitei242 – 2421NAD By similarity
Binding sitei324 – 3241Substrate By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi62 – 632NAD By similarity
Nucleotide bindingi133 – 1364NAD By similarity
Nucleotide bindingi153 – 1542NAD By similarity

GO - Molecular functioni

  1. hydrolase activity, acting on glycosyl bonds Source: UniProtKB-KW
  2. oxidoreductase activity Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Keywords - Ligandi

NAD

Enzyme and pathway databases

BioCyciSAMA326297:GH0T-1238-MONOMER.

Protein family/group databases

CAZyiGH109. Glycoside Hydrolase Family 109.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycosyl hydrolase family 109 protein (EC:3.2.1.-)
Gene namesi
Ordered Locus Names:Sama_1194
OrganismiShewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Taxonomic identifieri326297 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000009175: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3333Tat-type signal Reviewed predictionAdd
BLAST
Chaini34 – 455422Glycosyl hydrolase family 109 proteinPRO_5000205145Add
BLAST

Post-translational modificationi

Predicted to be exported by the Tat system. The position of the signal peptide cleavage has not been experimentally proven.

Interactioni

Protein-protein interaction databases

STRINGi326297.Sama_1194.

Structurei

3D structure databases

ProteinModelPortaliA1S4U5.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni242 – 2454Substrate binding By similarity

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG0673.
HOGENOMiHOG000252553.
OMAiCYGRDEL.
OrthoDBiEOG61P6MK.

Family and domain databases

Gene3Di3.40.50.720. 2 hits.
InterProiIPR016040. NAD(P)-bd_dom.
IPR000683. Oxidoreductase_N.
IPR006311. TAT_signal.
IPR019546. TAT_signal_bac_arc.
[Graphical view]
PfamiPF01408. GFO_IDH_MocA. 1 hit.
PF10518. TAT_signal. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01409. TAT_signal_seq. 1 hit.
PROSITEiPS51318. TAT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A1S4U5-1 [UniParc]FASTAAdd to Basket

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MAGIDRRGFL KASMASVAAA ALAGCASQQG TSATPKAAGK SVMGLVVPKM    50
AEVRVGLIGV GERGVGFIHH FNNIEGARIT AICDTDPLVI SRAQKIMADY 100
GRSQPAYYSK GQQAYLDLVA REDVDIVVIA TPWALHHPMA KAAMLAGKHA 150
FVEVPMGMTI EELWDLVDTA ELTQRNCMMM ENVCYGRDEL MVLNMVRQGL 200
FGELLHGEAA YIHELRWQMK ELDRKTGSWR TGYHAQINGN LYPTHGLGPV 250
AQYMNINRGD RFDYLSSMSS PALGRAAYAQ REFPKDHQRN QLNYICGDMN 300
TSLIKTVKGR TIMVQHDTTT PRPYSRHNLI QGTNGVFAGF PNRIALENHG 350
RGSFHEWDQD MEHWYGKYDH PLWTRMGREA EQNGGHGGMD FLMCWRMIYC 400
LRNGEPLDQD VYDGAAWSAV QPLSAASVAD RGNSRDFPDF TRGVWQSATP 450
LGIVE 455
Length:455
Mass (Da):50,618
Last modified:February 6, 2007 - v1
Checksum:i420B511BBCB00967
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000507 Genomic DNA. Translation: ABL99401.1.
RefSeqiWP_011759310.1. NC_008700.1.
YP_927071.1. NC_008700.1.

Genome annotation databases

EnsemblBacteriaiABL99401; ABL99401; Sama_1194.
GeneIDi4603446.
KEGGisaz:Sama_1194.
PATRICi23451027. VBISheAma74963_1234.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000507 Genomic DNA. Translation: ABL99401.1 .
RefSeqi WP_011759310.1. NC_008700.1.
YP_927071.1. NC_008700.1.

3D structure databases

ProteinModelPortali A1S4U5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 326297.Sama_1194.

Protein family/group databases

CAZyi GH109. Glycoside Hydrolase Family 109.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABL99401 ; ABL99401 ; Sama_1194 .
GeneIDi 4603446.
KEGGi saz:Sama_1194.
PATRICi 23451027. VBISheAma74963_1234.

Phylogenomic databases

eggNOGi COG0673.
HOGENOMi HOG000252553.
OMAi CYGRDEL.
OrthoDBi EOG61P6MK.

Enzyme and pathway databases

BioCyci SAMA326297:GH0T-1238-MONOMER.

Family and domain databases

Gene3Di 3.40.50.720. 2 hits.
InterProi IPR016040. NAD(P)-bd_dom.
IPR000683. Oxidoreductase_N.
IPR006311. TAT_signal.
IPR019546. TAT_signal_bac_arc.
[Graphical view ]
Pfami PF01408. GFO_IDH_MocA. 1 hit.
PF10518. TAT_signal. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR01409. TAT_signal_seq. 1 hit.
PROSITEi PS51318. TAT. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1098 / SB2B.

Entry informationi

Entry nameiGH109_SHEAM
AccessioniPrimary (citable) accession number: A1S4U5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: February 6, 2007
Last modified: September 3, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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