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A1S071 (A1S071_THEPD) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Alpha amylase, catalytic region EMBL ABL78851.1
Gene names
Ordered Locus Names:Tpen_1454
OrganismThermofilum pendens (strain Hrk 5)
Taxonomic identifier368408 [NCBI]
Taxonomic lineageArchaea › Crenarchaeota › Thermoprotei › Thermoproteales › Thermofilaceae › Thermofilum

Protein attributes

Sequence length739 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2828 Potential EMBL ABL78851.1
Chain29 – 739711 Potential EMBL ABL78851.1
PRO_5000204783

Sequences

Sequence LengthMass (Da)Tools
A1S071 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: 8F17C191C927D878

FASTA73981,959
        10         20         30         40         50         60 
MRSRKIAAIL AILLLLGVLI GTSQATAGPS PSYPTGDPQT WVIYQIVIDR FYDGNTSNNN 

        70         80         90        100        110        120 
PAKSPGLYDP TKTNWRLYWG GDIDGIIAKL PYLYELGVTA IWISPVFDNI DVAINTSSGL 

       130        140        150        160        170        180 
QAGYHGYWPK DFKVIEEHFG SWSTFYKLIQ EARKYNITVI IDFVVNHSNP SDAGEYGALY 

       190        200        210        220        230        240 
DNGTFVTDYP TDAKYATVDP ITRSLSNIYN HNGGITNWND RWEVRYKNLF NLADFNQLNP 

       250        260        270        280        290        300 
WVDRYLKEST ALYLKAGIGG IRLDAVKHVE PGWLKTYADY VYAIKNVFMF GEWYQSFNDE 

       310        320        330        340        350        360 
MYWDMVKFAN DSGISVINIP LQQVLVDVFA YDTKTMYDLD NAVKKYTSNF MWQNKLVNFI 

       370        380        390        400        410        420 
DSHDVPRFLS LSKSITRFHQ VLAFVMTAPG IPVIYYGDEQ YLHYDATNEF GQVGGDPYNR 

       430        440        450        460        470        480 
PMMTSWDTTT TAFKLIKALA QLRRANTALA YGLVTTRYVS SDVYIFERKF FGNVVLVAIN 

       490        500        510        520        530        540 
RNLNSPVAVS NVYTSLPDGV YSDYLGGLIN GTSIKVVGGK FSVTLPPGSV SVWQYKAVPS 

       550        560        570        580        590        600 
GPWVGAIDPT MGRAGNVVVI SGEGFGSQPG QVLITNGQST WSATVTYWSD KSIEFIVPSG 

       610        620        630        640        650        660 
VTTPLNDNHV TVIVKRADGA TSNGIAFQYL SGRQIPVIFE VQNTKGTTLE TVPGEFLWLT 

       670        680        690        700        710        720 
GSVPELSNWS PATTRAVGPM LCPAWPNWFV VASVPANTYI EFKFLKAPLG GTGVWEPGSN 

       730 
HAYTTPSDGI GRVSVTANG

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References

[1]"Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction."
Anderson I., Rodriguez J., Susanti D., Porat I., Reich C., Ulrich L.E., Elkins J.G., Mavromatis K., Lykidis A., Kim E., Thompson L.S., Nolan M., Land M., Copeland A., Lapidus A., Lucas S., Detter C., Zhulin I.B. expand/collapse author list , Olsen G.J., Whitman W., Mukhopadhyay B., Bristow J., Kyrpides N.
J. Bacteriol. 190:2957-2965(2008) [PubMed: 18263724] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Hrk 5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000505 Genomic DNA. Translation: ABL78851.1.
RefSeqYP_920854.1. NC_008698.1.

3D structure databases

ProteinModelPortalA1S071.
ModBaseSearch...

Protein-protein interaction databases

STRINGA1S071.

Protein family/group databases

CAZyCBM20. Carbohydrate-Binding Module Family 20.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4600580.
GenomeReviewsGene locus Tpen_1454 in contig CP000505_GR.
KEGGtpe:Tpen_1454.

Phylogenomic databases

eggNOGarNOG04211.
HOGENOMHBG726713.
OMAHTSTAEY.
PhylomeDBA1S071.
ProtClustDBCLSK2533289.

Enzyme and pathway databases

BioCycTPEN368408:TPEN_1454-MONOMER.

Family and domain databases

InterProIPR006048. A-amylase_b_C.
IPR015902. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002909. IPT_TIG_rcpt.
[Graphical view]
Gene3DG3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit.
G3DSA:3.20.20.80. Glyco_hydro_cat. 2 hits.
G3DSA:2.60.40.10. Ig-like_fold. 2 hits.
PANTHERPTHR10357. Alpha_amylase. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF00686. CBM_20. 1 hit.
PF01833. TIG. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
SM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMSSF49452. CBD_4. 1 hit.
SSF51445. Glyco_hydro_cat. 1 hit.
SSF81296. Ig_E-set. 1 hit.
PROSITEPS51166. CBM20. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA1S071_THEPD
AccessionPrimary (citable) accession number: A1S071
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: January 25, 2012
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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