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A1RXQ6 (A1RXQ6_THEPD) Unreviewed, UniProtKB/TrEMBL

Last modified November 16, 2011. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Probable exosome complex exonuclease 1 HAMAP MF_00591
EC=3.1.13.- HAMAP MF_00591
Gene names
Ordered Locus Names:Tpen_0581
OrganismThermofilum pendens (strain Hrk 5)
Taxonomic identifier368408 [NCBI]
Taxonomic lineageArchaea › Crenarchaeota › Thermoprotei › Thermoproteales › Thermofilaceae › Thermofilum

Protein attributes

Sequence length245 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Probably involved in the 3'->5' degradation of a variety of RNA species By similarity. HAMAP MF_00591

Subunit structure

Component of the archaeal exosome multienzyme ribonuclease complex By similarity. HAMAP MF_00591

Subcellular location

Cytoplasm By similarity HAMAP MF_00591.

Sequence similarities

Belongs to the RNase PH family. HAMAP MF_00591

Sequences

Sequence LengthMass (Da)Tools
A1RXQ6 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: D7F362AA5A6CCAF4

FASTA24527,008
        10         20         30         40         50         60 
MKRGAPERLI DENGRRVDGR LPDEMRPLRV EAGVLKNADG SAYVELGNNK VLAAVYGPRE 

        70         80         90        100        110        120 
PMPRHEALPD RAILKCRYSM LPFSVAERKS PQPSRREIEL SKVIREALAP AVFLNEYPRT 

       130        140        150        160        170        180 
SIEVYIHILE ADGGTRTASI IAGSVALADA GIAMRDLVAA IAVGKIGNVL VLDINGIEDQ 

       190        200        210        220        230        240 
YGDGDMPIAM MPQRGEITLL QADGVFTPQE IEEALRLAQK AFQKIYAEQV RALKTKYESV 


KEVEE

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References

[1]"Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction."
Anderson I., Rodriguez J., Susanti D., Porat I., Reich C., Ulrich L.E., Elkins J.G., Mavromatis K., Lykidis A., Kim E., Thompson L.S., Nolan M., Land M., Copeland A., Lapidus A., Lucas S., Detter C., Zhulin I.B. expand/collapse author list , Olsen G.J., Whitman W., Mukhopadhyay B., Bristow J., Kyrpides N.
J. Bacteriol. 190:2957-2965(2008) [PubMed: 18263724] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Hrk 5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000505 Genomic DNA. Translation: ABL77986.1.
RefSeqYP_919989.1. NC_008698.1.

3D structure databases

ProteinModelPortalA1RXQ6.
SMRA1RXQ6. Positions 8-242.
ModBaseSearch...

Protein-protein interaction databases

STRINGA1RXQ6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4600696.
GenomeReviewsGene locus Tpen_0581 in contig CP000505_GR.
KEGGtpe:Tpen_0581.

Phylogenomic databases

eggNOGarNOG04562.
HOGENOMHBG737187.
OMAHMAPFST.
PhylomeDBA1RXQ6.

Enzyme and pathway databases

BioCycTPEN368408:TPEN_0581-MONOMER.

Family and domain databases

HAMAPMF_00591. Exosome_Exonucl_1.
[Tree]
InterProIPR011807. ExoRNase_exosome_complex.
IPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR020568. Ribosomal_S5_D2-typ_fold.
[Graphical view]
KOK11600.
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMSSF55666. 3_ExoRNase. 1 hit.
SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMsTIGR02065. ECX1. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA1RXQ6_THEPD
AccessionPrimary (citable) accession number: A1RXQ6
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: November 16, 2011
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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