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Protein

30S ribosomal protein S28e

Gene

rps28e

Organism
Thermofilum pendens (strain Hrk 5)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S28eUniRule annotation
Gene namesi
Name:rps28eUniRule annotation
Ordered Locus Names:Tpen_0495
OrganismiThermofilum pendens (strain Hrk 5)
Taxonomic identifieri368408 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiThermoprotealesThermofilaceaeThermofilum
Proteomesi
  • UP000000641 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000041251 – 7730S ribosomal protein S28eAdd BLAST77

Interactioni

Protein-protein interaction databases

STRINGi368408.Tpen_0495.

Structurei

3D structure databases

ProteinModelPortaliA1RXH2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S28e family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04314. Archaea.
COG2053. LUCA.
HOGENOMiHOG000224552.
KOiK02979.
OMAiMHGEASQ.

Family and domain databases

CDDicd04457. S1_S28E. 1 hit.
HAMAPiMF_00292. Ribosomal_S28e. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR000289. Ribosomal_S28e.
IPR028626. Ribosomal_S28e_CS.
[Graphical view]
PANTHERiPTHR10769. PTHR10769. 1 hit.
PfamiPF01200. Ribosomal_S28e. 1 hit.
[Graphical view]
ProDomiPD005541. Ribosomal_S28e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00961. RIBOSOMAL_S28E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1RXH2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSQAPADKF SDAVPAEVVQ IIGRTGITGE VTQVRVRVLE GRDKGRILTR
60 70
NVRGPVRVGD IVMLRETERE ARKIATR
Length:77
Mass (Da):8,514
Last modified:February 6, 2007 - v1
Checksum:i1DC1759B8F3D2ACE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000505 Genomic DNA. Translation: ABL77902.1.
RefSeqiWP_011752167.1. NC_008698.1.

Genome annotation databases

EnsemblBacteriaiABL77902; ABL77902; Tpen_0495.
GeneIDi4601329.
KEGGitpe:Tpen_0495.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000505 Genomic DNA. Translation: ABL77902.1.
RefSeqiWP_011752167.1. NC_008698.1.

3D structure databases

ProteinModelPortaliA1RXH2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi368408.Tpen_0495.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABL77902; ABL77902; Tpen_0495.
GeneIDi4601329.
KEGGitpe:Tpen_0495.

Phylogenomic databases

eggNOGiarCOG04314. Archaea.
COG2053. LUCA.
HOGENOMiHOG000224552.
KOiK02979.
OMAiMHGEASQ.

Family and domain databases

CDDicd04457. S1_S28E. 1 hit.
HAMAPiMF_00292. Ribosomal_S28e. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR000289. Ribosomal_S28e.
IPR028626. Ribosomal_S28e_CS.
[Graphical view]
PANTHERiPTHR10769. PTHR10769. 1 hit.
PfamiPF01200. Ribosomal_S28e. 1 hit.
[Graphical view]
ProDomiPD005541. Ribosomal_S28e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00961. RIBOSOMAL_S28E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS28_THEPD
AccessioniPrimary (citable) accession number: A1RXH2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: February 6, 2007
Last modified: November 2, 2016
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.