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Protein

DNA-binding protein Tpen_0471

Gene

Tpen_0471

Organism
Thermofilum pendens (strain Hrk 5)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciTPEN368408:GHSG-491-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-binding protein Tpen_0471UniRule annotation
Gene namesi
Ordered Locus Names:Tpen_0471
OrganismiThermofilum pendens (strain Hrk 5)
Taxonomic identifieri368408 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiThermoprotealesThermofilaceaeThermofilum
Proteomesi
  • UP000000641 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002845701 – 116DNA-binding protein Tpen_0471Add BLAST116

Interactioni

Protein-protein interaction databases

STRINGi368408.Tpen_0471.

Structurei

3D structure databases

ProteinModelPortaliA1RXF0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PDCD5 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04179. Archaea.
COG2118. LUCA.
HOGENOMiHOG000194121.
KOiK06875.
OMAiIREPIDD.

Family and domain databases

Gene3Di1.10.8.140. 1 hit.
HAMAPiMF_00026. dsDNA_bind. 1 hit.
InterProiIPR022889. DNA_bind_arc.
IPR002836. PDCD5-related.
[Graphical view]
PANTHERiPTHR10840. PTHR10840. 1 hit.
PfamiPF01984. dsDNA_bind. 1 hit.
[Graphical view]
PIRSFiPIRSF015730. TFAR19. 1 hit.
SUPFAMiSSF46950. SSF46950. 1 hit.

Sequencei

Sequence statusi: Complete.

A1RXF0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYDEGGEEL EEIKRRKLLE YQRALEAEKA KEEQKAREEA MRQEILRRIL
60 70 80 90 100
TPEARARLSN LKLVKPELVE ALEIQLIQLA ESRSVRVPID DETLKQILAR
110
LYEAQRAREV KFRVSF
Length:116
Mass (Da):13,722
Last modified:February 6, 2007 - v1
Checksum:i7B2732DFE65262DC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000505 Genomic DNA. Translation: ABL77880.1.
RefSeqiWP_011752145.1. NC_008698.1.

Genome annotation databases

EnsemblBacteriaiABL77880; ABL77880; Tpen_0471.
GeneIDi4602030.
KEGGitpe:Tpen_0471.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000505 Genomic DNA. Translation: ABL77880.1.
RefSeqiWP_011752145.1. NC_008698.1.

3D structure databases

ProteinModelPortaliA1RXF0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi368408.Tpen_0471.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABL77880; ABL77880; Tpen_0471.
GeneIDi4602030.
KEGGitpe:Tpen_0471.

Phylogenomic databases

eggNOGiarCOG04179. Archaea.
COG2118. LUCA.
HOGENOMiHOG000194121.
KOiK06875.
OMAiIREPIDD.

Enzyme and pathway databases

BioCyciTPEN368408:GHSG-491-MONOMER.

Family and domain databases

Gene3Di1.10.8.140. 1 hit.
HAMAPiMF_00026. dsDNA_bind. 1 hit.
InterProiIPR022889. DNA_bind_arc.
IPR002836. PDCD5-related.
[Graphical view]
PANTHERiPTHR10840. PTHR10840. 1 hit.
PfamiPF01984. dsDNA_bind. 1 hit.
[Graphical view]
PIRSFiPIRSF015730. TFAR19. 1 hit.
SUPFAMiSSF46950. SSF46950. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY471_THEPD
AccessioniPrimary (citable) accession number: A1RXF0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 17, 2007
Last sequence update: February 6, 2007
Last modified: November 2, 2016
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.