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Protein

30S ribosomal protein S4e

Gene

rps4e

Organism
Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciPISL384616:GC8H-576-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S4eUniRule annotation
Gene namesi
Name:rps4eUniRule annotation
Ordered Locus Names:Pisl_0560
OrganismiPyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3)
Taxonomic identifieri384616 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiThermoprotealesThermoproteaceaePyrobaculum
Proteomesi
  • UP000002595 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 23823830S ribosomal protein S4ePRO_1000081348Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi384616.Pisl_0560.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini38 – 11073S4 RNA-bindingUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ribosomal protein S4e family.UniRule annotation
Contains 1 S4 RNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04093. Archaea.
COG1471. LUCA.
HOGENOMiHOG000231324.
KOiK02987.
OMAiYWWPIPR.

Family and domain databases

HAMAPiMF_00485. Ribosomal_S4e. 1 hit.
InterProiIPR000876. Ribosomal_S4e.
IPR013845. Ribosomal_S4e_central_region.
IPR013843. Ribosomal_S4e_N.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11581. PTHR11581. 1 hit.
PfamiPF00900. Ribosomal_S4e. 1 hit.
PF08071. RS4NT. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
PIRSFiPIRSF002116. Ribosomal_S4. 1 hit.
ProDomiPD002667. Ribosomal_S4e_central. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
PROSITEiPS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1RS06-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVHLRRTTAP YWWPIPRKIG GVWVVRSSPG PHSLAYSLPL AIIIRDVLKY
60 70 80 90 100
AKTMREARYI ISRGYVKIDG VIRKDYKFPV GLMDVVEIVP TGEIYRVVPD
110 120 130 140 150
EKKYYALIPI SSEEATLKLL RVEGKTAVKG GKLQLHFHDG RNLIVSQDVG
160 170 180 190 200
RHIKTFDTVL YDLQNKNIKM HIPFKLGAYA VVTRGGNVGF SGKLYEIVWT
210 220 230
LKRRQSVVAL KRNEEVRRTI LDYIMITGSE APVIKISP
Length:238
Mass (Da):27,128
Last modified:February 6, 2007 - v1
Checksum:iB3A2956C9786E3FD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000504 Genomic DNA. Translation: ABL87738.1.
RefSeqiWP_011762314.1. NC_008701.1.

Genome annotation databases

EnsemblBacteriaiABL87738; ABL87738; Pisl_0560.
GeneIDi4617479.
KEGGipis:Pisl_0560.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000504 Genomic DNA. Translation: ABL87738.1.
RefSeqiWP_011762314.1. NC_008701.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi384616.Pisl_0560.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABL87738; ABL87738; Pisl_0560.
GeneIDi4617479.
KEGGipis:Pisl_0560.

Phylogenomic databases

eggNOGiarCOG04093. Archaea.
COG1471. LUCA.
HOGENOMiHOG000231324.
KOiK02987.
OMAiYWWPIPR.

Enzyme and pathway databases

BioCyciPISL384616:GC8H-576-MONOMER.

Family and domain databases

HAMAPiMF_00485. Ribosomal_S4e. 1 hit.
InterProiIPR000876. Ribosomal_S4e.
IPR013845. Ribosomal_S4e_central_region.
IPR013843. Ribosomal_S4e_N.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11581. PTHR11581. 1 hit.
PfamiPF00900. Ribosomal_S4e. 1 hit.
PF08071. RS4NT. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
PIRSFiPIRSF002116. Ribosomal_S4. 1 hit.
ProDomiPD002667. Ribosomal_S4e_central. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
PROSITEiPS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS4E_PYRIL
AccessioniPrimary (citable) accession number: A1RS06
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: February 6, 2007
Last modified: September 7, 2016
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.