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Protein

Ribosomal RNA small subunit methyltransferase J

Gene

rsmJ

Organism
Shewanella sp. (strain W3-18-1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Specifically methylates the guanosine in position 1516 of 16S rRNA.UniRule annotation

Catalytic activityi

S-adenosyl-L-methionine + guanine(1516) in 16S rRNA = S-adenosyl-L-homocysteine + N(2)-methylguanine(1516) in 16S rRNA.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei179S-adenosyl-L-methionineUniRule annotation1

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Methyltransferase, Transferase

Keywords - Biological processi

rRNA processing

Keywords - Ligandi

S-adenosyl-L-methionine

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase JUniRule annotation (EC:2.1.1.242UniRule annotation)
Alternative name(s):
16S rRNA m2G1516 methyltransferaseUniRule annotation
rRNA (guanine-N(2)-)-methyltransferaseUniRule annotation
Gene namesi
Name:rsmJUniRule annotation
Ordered Locus Names:Sputw3181_3966
OrganismiShewanella sp. (strain W3-18-1)
Taxonomic identifieri351745 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002926501 – 259Ribosomal RNA small subunit methyltransferase JAdd BLAST259

Structurei

3D structure databases

ProteinModelPortaliA1RQ25.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni109 – 110S-adenosyl-L-methionine bindingUniRule annotation2
Regioni125 – 126S-adenosyl-L-methionine bindingUniRule annotation2
Regioni161 – 162S-adenosyl-L-methionine bindingUniRule annotation2

Sequence similaritiesi

Belongs to the methyltransferase superfamily. RsmJ family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000218236.
KOiK15984.
OMAiSSRYDIY.
OrthoDBiPOG091H01DK.

Family and domain databases

Gene3Di3.40.50.150. 1 hit.
HAMAPiMF_01523. 16SrRNA_methyltr_J. 1 hit.
InterProiIPR007536. 16SrRNA_methylTrfase_J.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF04445. SAM_MT. 1 hit.
[Graphical view]
SUPFAMiSSF53335. SSF53335. 1 hit.

Sequencei

Sequence statusi: Complete.

A1RQ25-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAILLVRRQ PVTPIFFNQQ YPTLVDICAR WQLIYDANAP FELRFESDSL
60 70 80 90 100
TLHKRDEPKL DGILVDFVTG AVAHRRKFGG GRGQSIAKAV GLKQGVTPSV
110 120 130 140 150
VDGTAGLGRD AFVLASLGCT VTMVERHPVV AALLEDGLRR AYQDAEIGDW
160 170 180 190 200
MHERMQLFHG SSLEALSKLE QEVDVVYLDP MYPHRDKSAL VKKEMRVFQS
210 220 230 240 250
LVGADLDADG LLAPALALAT KRVVVKRPDY AEDLDGVKPS MVIDTKKNRF

DVYVKAAMK
Length:259
Mass (Da):28,723
Last modified:February 6, 2007 - v1
Checksum:iCC70F2938AE14A91
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000503 Genomic DNA. Translation: ABM26770.1.
RefSeqiWP_011791192.1. NC_008750.1.

Genome annotation databases

EnsemblBacteriaiABM26770; ABM26770; Sputw3181_3966.
KEGGishw:Sputw3181_3966.
PATRICi23601908. VBISheSp103602_4156.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000503 Genomic DNA. Translation: ABM26770.1.
RefSeqiWP_011791192.1. NC_008750.1.

3D structure databases

ProteinModelPortaliA1RQ25.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABM26770; ABM26770; Sputw3181_3966.
KEGGishw:Sputw3181_3966.
PATRICi23601908. VBISheSp103602_4156.

Phylogenomic databases

HOGENOMiHOG000218236.
KOiK15984.
OMAiSSRYDIY.
OrthoDBiPOG091H01DK.

Family and domain databases

Gene3Di3.40.50.150. 1 hit.
HAMAPiMF_01523. 16SrRNA_methyltr_J. 1 hit.
InterProiIPR007536. 16SrRNA_methylTrfase_J.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF04445. SAM_MT. 1 hit.
[Graphical view]
SUPFAMiSSF53335. SSF53335. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRSMJ_SHESW
AccessioniPrimary (citable) accession number: A1RQ25
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 26, 2007
Last sequence update: February 6, 2007
Last modified: November 2, 2016
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.