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Protein

Pseudouridine synthase

Gene

Sputw3181_3143

Organism
Shewanella sp. (strain W3-18-1)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil.UniRule annotation

Catalytic activityi

RNA uridine = RNA pseudouridine.UniRule annotation

GO - Molecular functioni

  1. pseudouridine synthase activity Source: InterPro
  2. RNA binding Source: InterPro

GO - Biological processi

  1. pseudouridine synthesis Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationImported

Enzyme and pathway databases

BioCyciSSP351745:GCOY-3244-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
Gene namesi
Ordered Locus Names:Sputw3181_3143Imported
OrganismiShewanella sp. (strain W3-18-1)Imported
Taxonomic identifieri351745 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000002597 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi351745.Sputw3181_3143.

Structurei

3D structure databases

ProteinModelPortaliA1RMR3.
SMRiA1RMR3. Positions 3-322.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the pseudouridine synthase RluA family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0564.
HOGENOMiHOG000275919.
KOiK06180.
OMAiTYGGRPR.
OrthoDBiEOG6P070X.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1RMR3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTQEINLKSE ISATQTGLRL DQALAELFPD YSRTRIKEWI LSDAVYVDGV
60 70 80 90 100
IVNKPREKVF ELQQIEIAAT LEEEVHAAAQ AIELNIVYED DHILVINKQA
110 120 130 140 150
GLVVHPGAGN ADGTLMNALL HHCPDIEHVP RAGIVHRLDK DTTGLMVVAK
160 170 180 190 200
TVEAQTHLVA ALQAREITRE YEAIVMGTMT GGGTVDEPIG RHPTKRTHMA
210 220 230 240 250
VHHSGKPAVT HYRVAEKFRN HTRLRLRLES GRTHQIRVHM EYIGHVLVGD
260 270 280 290 300
PVYGGRPKPP KAASPEFFEI LKNFKRQALH AVRLELAHPV SCEIMSWQAP
310 320
IPEDMVILTK ALRQDTVEHP IEYL
Length:324
Mass (Da):36,321
Last modified:February 5, 2007 - v1
Checksum:i96C26F5C10155FFB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000503 Genomic DNA. Translation: ABM25958.1.
RefSeqiYP_964512.1. NC_008750.1.

Genome annotation databases

EnsemblBacteriaiABM25958; ABM25958; Sputw3181_3143.
KEGGishw:Sputw3181_3143.
PATRICi23600145. VBISheSp103602_3293.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000503 Genomic DNA. Translation: ABM25958.1.
RefSeqiYP_964512.1. NC_008750.1.

3D structure databases

ProteinModelPortaliA1RMR3.
SMRiA1RMR3. Positions 3-322.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi351745.Sputw3181_3143.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABM25958; ABM25958; Sputw3181_3143.
KEGGishw:Sputw3181_3143.
PATRICi23600145. VBISheSp103602_3293.

Phylogenomic databases

eggNOGiCOG0564.
HOGENOMiHOG000275919.
KOiK06180.
OMAiTYGGRPR.
OrthoDBiEOG6P070X.

Enzyme and pathway databases

BioCyciSSP351745:GCOY-3244-MONOMER.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: W3-18-1Imported.

Entry informationi

Entry nameiA1RMR3_SHESW
AccessioniPrimary (citable) accession number: A1RMR3
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2007
Last sequence update: February 5, 2007
Last modified: March 31, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.