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A1RLB0 (A1RLB0_SHESW) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Sputw3181_2632 EMBL ABM25455.1
OrganismShewanella sp. (strain W3-18-1) [Complete proteome] [HAMAP] EMBL ABM25455.1
Taxonomic identifier351745 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length549 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
A1RLB0 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: A772DA7DD242E9AD

FASTA54960,787
        10         20         30         40         50         60 
MTQKLPRQAT ASEESLMRIF TVPEDAESTL SIIEQKLSED LAGFLGDSIA ALEKPLSEIE 

        70         80         90        100        110        120 
TDFQAFKIPT QPRFVSDYTD EIMQNLVAHS VHTSAPSFIG HMTSALPYFV LPLSKMMVGL 

       130        140        150        160        170        180 
NQNLVKIETS KAFTPLERQV LGMMHHLIYA QDTDFYQSWM HSANHSLGAF CSGGTVANIT 

       190        200        210        220        230        240 
ALWIARNQLL KADGEFKGVT REGLLKALRY YGYDDLAILV SERGHYSLGK AVDLLGIGRD 

       250        260        270        280        290        300 
NIISIPTDSH NKVDIAKMRE AALELARKNI KVLAIVGVAG TTETGNVDPL IELAALAKEL 

       310        320        330        340        350        360 
NCHFHVDAAW GGASLLSNKY RHLLAGIELA DSVTIDAHKQ MYVPMGAGMV LFKNPEFAHA 

       370        380        390        400        410        420 
IAHHAEYILR RGSKDLGSQT LEGSRPGMAM LVHACLQIIG LDGYEILINN SIEKARYFAE 

       430        440        450        460        470        480 
QIKAHKDFEL VTEPELCLLT YRYVPAKVQA AIQVAIEQGD TAKLARFNEL LDGLTQFIQK 

       490        500        510        520        530        540 
HQREQGKSFV SRTRISPARY FRQATVVFRV VLANPLTSHE ILNQVLVEQS EIAALDKEFL 


PALMAMIAE 

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References

[1]"Complete sequence of Shewanella sp. W3-18-1."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Lykidis A., Tiedje J., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: W3-18-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000503 Genomic DNA. Translation: ABM25455.1.
RefSeqYP_964009.1. NC_008750.1.

3D structure databases

ProteinModelPortalA1RLB0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING351745.Sputw3181_2632.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABM25455; ABM25455; Sputw3181_2632.
GeneID4659458.
KEGGshw:Sputw3181_2632.
PATRIC23599059. VBISheSp103602_2754.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000282553.
KOK01580.
OMAALGAFCS.
OrthoDBEOG6MSRZP.
ProtClustDBCLSK874231.

Enzyme and pathway databases

BioCycSSP351745:GCOY-2730-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA1RLB0_SHESW
AccessionPrimary (citable) accession number: A1RLB0
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: November 13, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)