A1RKB8 (A1RKB8_SHESW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Cystathionine beta-lyase EMBL ABM25113.1
EC=4.4.1.8 EMBL ABM25113.1

Gene names

Ordered Locus Names:

Sputw3181_2289

Organism

Shewanella sp. (strain W3-18-1) [Complete proteome] [HAMAP] EMBL ABM25113.1

Taxonomic identifier

351745 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	399 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Lyase EMBL ABM25113.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cellular amino acid metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	cystathionine beta-lyase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1RKB8 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: 4D7A92A02EA309D0	FASTA	399	44,004
	10 20 30 40 50 60 MTDKHRQATQ IVSLGRDKKW TKGVINPPVF RASTIVFDTM EDMRHAAKNK TNGEMFYGRR 70 80 90 100 110 120 GTPTHFAFQA AIAQLEGGVG TALYPSGAAA ISAALLSFLK TGDHLLMVDS VYEPTRDLCT 130 140 150 160 170 180 HILAGFGIET TYYDPLIGAG ISDLIRPNTK VLFLESPGSI TMEVQDVPTL CRIAHEHGLV 190 200 210 220 230 240 TILDNTWASP INSKPFEMGV DISIQAATKY IVGHSDVMIG TATANEKYWP QLREHSYLMG 250 260 270 280 290 300 QTTSPDDVYL AARGLRTLGV RMAQHEKNAM QVANWLKTRP EVDHLRHPAF DTCPGHEFFK 310 320 330 340 350 360 RDFSASNGLF SFVLKQGDAD AVTAMVENMS HFKMGFSWGG YESLILGIFG IDRIRSATKW 370 380 390 DPSKPLIRLH IGLEDPADLI ADLSAGFERF NAVLTAKAK

References

[1]

"Complete sequence of Shewanella sp. W3-18-1." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Lykidis A., Tiedje J., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: W3-18-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000503 Genomic DNA. Translation: ABM25113.1.
RefSeq	YP_963667.1. NC_008750.1.
3D structure databases
ProteinModelPortal	A1RKB8.
SMR	A1RKB8. Positions 7-390.
ModBase	Search...
Protein-protein interaction databases
STRING	A1RKB8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4658937.
GenomeReviews	Gene locus Sputw3181_2289 in contig CP000503_GR.
KEGG	shw:Sputw3181_2289.
NMPDR	fig|351745.7.peg.2138.
PATRIC	23598297. VBISheSp103602_2392.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0626.
HOGENOM	HBG754729.
OMA	REQSYLM.
ProtClustDB	PRK09028.
Family and domain databases
InterPro	IPR000277. Cys/Met-Metab_PyrdxlP-dep_enz. IPR006233. Cys_b_lyase_bac. IPR015424. PyrdxlP-dep_Trfase_major_dom. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Gene3D	G3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit. G3DSA:3.90.1150.10. PyrdxlP-dep_Trfase_major_sub2. 1 hit.
KO	K01760.
PANTHER	PTHR11808:SF8. Cys_b_lyase_bac. 1 hit. PTHR11808. Cys_Met_Meta_PP. 1 hit.
Pfam	PF01053. Cys_Met_Meta_PP. 1 hit. [Graphical view]
PIRSF	PIRSF001434. CGS. 1 hit.
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01324. Cysta_beta_ly_B. 1 hit.
PROSITE	PS00868. CYS_MET_METAB_PP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A1RKB8_SHESW

Accession

Primary (citable) accession number: A1RKB8

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	January 25, 2012
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)