A1RJF5 (A1RJF5_SHESW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glycoside hydrolase, family 43 EMBL ABM24800.1

Gene names

Ordered Locus Names:

Sputw3181_1965

Organism

Shewanella sp. (strain W3-18-1) [Complete proteome] [HAMAP] EMBL ABM24800.1

Taxonomic identifier

351745 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	1112 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABM24800.1
Molecular function	Hydrolase EMBL ABM24800.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 21	21	Potential EMBL ABM24800.1
	Chain	22 – 1112	1091	Potential EMBL ABM24800.1		PRO_5000204005

Sequences

	Sequence		Length	Mass (Da)
	A1RJF5 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: A6D72E8E06723366	FASTA	1,112	120,307
	10 20 30 40 50 60 MVLQRSFVSV GLILALASCG GDDSSNSAND TNTFTLPPPI TFANPTLSGD VNYTDVVVHD 70 80 90 100 110 120 PSIIKDTDGT YYVFGSHLAV ASSKDLISWT QIALDGVETS SLFNTYATEI AEGTAWTGGF 130 140 150 160 170 180 IGSWAPDIKK LANGKYHFYY NFCAGPVESD CVSRSYLGVA TSDKIMGPYV NQGLFLKSGH 190 200 210 220 230 240 EGTENPGVNG KDYSGYTDPN AIDPAIFYDK DGGLWMTYGS YSGGIWVLQL DPTTGKPLDG 250 260 270 280 290 300 QGYGTKIMGG DYSPIEGSYV IYSPKSEYYY MFTSFGGYEQ NDGYNIRIAR AKTPNGPYVD 310 320 330 340 350 360 ASGKDMIDVT GNAEMIAPYG AKLMGSFLFD AHPGDVGTDI GYMSPGHNSA FYDANTGKYF 370 380 390 400 410 420 LVFHTRFPDT GEGHSVRVHE MFMNSDGWLV ASPQRYAAIN GENIVDELDI QGAYKFINHA 430 440 450 460 470 480 KDINTKPHKS VHIQLKRTWT NKGAITGDVT GTYVQTDDSH ITLTLDDLGT FEGVLAWQWD 490 500 510 520 530 540 PNQAKLMPTF SAMSSDGVSI WGTKLADKTT DQILTDTVNG ISVVSEATTD SILLPTEGTH 550 560 570 580 590 600 GATINWVSSD EGVIRTDGTI IRPNAGEGDK VITLTATVMV NGKKVTKTFQ VTVYARKAYN 610 620 630 640 650 660 RIAHYRFENN LNDTLGLFAA GQPTGDRIFK SAESVGYSIG LEGQALSLDG AHGVLLPSGI 670 680 690 700 710 720 ISSYEYTVSF WANPSVIAQF TTAFFGAVNE QAAEDGSKFS NTWISMLPQG WDGNTMFWSN 730 740 750 760 770 780 GTAWFDGVTG ERIAENTWSH LAFSVKNGLV NVYINGIEKF SQGNLADFFT GNEGVFALGV 790 800 810 820 830 840 NYWDIPYNGL LDELKVYEAA LTAEEVKALD IDKLPDSELL ASAVDILDLG DLTAVRKDLI 850 860 870 880 890 900 LPVTGPYAAA ITWASSDPTT IDHKGGVNQP SRDETDKVVT LTATLKLGQA TQTKVFTATV 910 920 930 940 950 960 KSKAPPTPIA VYSFEDNLID STANFGAGNV VGKLIGTTGG TISYAAGAVG KAAVFDGASG 970 980 990 1000 1010 1020 IELPNNLIKD NTYSVSLWLN PKVLNKYTTA LFAYASTSSW TSILPGGQND YERLVLWSGE 1030 1040 1050 1060 1070 1080 AWYDGRTGYV MPKDQWSHMV YTVNAGDVKV YVNGNLMFTG ANFPNVFSAP TTKFAVGVNF 1090 1100 1110 WDVPFSGSID EIKFYDEVVT EQDVKELFDE SK

References

[1]

"Complete sequence of Shewanella sp. W3-18-1." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Lykidis A., Tiedje J., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: W3-18-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000503 Genomic DNA. Translation: ABM24800.1.
RefSeq	YP_963354.1. NC_008750.1.
3D structure databases
ProteinModelPortal	A1RJF5.
ModBase	Search...
Protein-protein interaction databases
STRING	A1RJF5.
Protein family/group databases
CAZy	GH43. Glycoside Hydrolase Family 43.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4660698.
GenomeReviews	Gene locus Sputw3181_1965 in contig CP000503_GR.
KEGG	shw:Sputw3181_1965.
NMPDR	fig|351745.7.peg.1847.
PATRIC	23597567. VBISheSp103602_2044.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3507.
HOGENOM	HBG402284.
OMA	GWDGNTM.
ProtClustDB	CLSK845562.
Family and domain databases
InterPro	IPR008985. ConA-like_lec_gl. IPR013320. ConA-like_subgrp. IPR006710. Glyco_hydro_43. IPR023296. Glyco_hydro_43_beta-prop. [Graphical view]
Gene3D	G3DSA:2.60.120.200. ConA_like_subgrp. 2 hits. G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.
PANTHER	PTHR22925. Glyco_hydro_43. 1 hit.
Pfam	PF04616. Glyco_hydro_43. 1 hit. [Graphical view]
SUPFAM	SSF49899. ConA_like_lec_gl. 2 hits. SSF75005. Glyco_hydro_43_beta-prop. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A1RJF5_SHESW

Accession

Primary (citable) accession number: A1RJF5

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	December 14, 2011
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)