A1RJF1 (A1RJF1_SHESW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Arabinan endo-1,5-alpha-L-arabinosidase EMBL ABM24796.1
EC=3.2.1.99 EMBL ABM24796.1

Gene names

Ordered Locus Names:

Sputw3181_1961

Organism

Shewanella sp. (strain W3-18-1) [Complete proteome] [HAMAP] EMBL ABM24796.1

Taxonomic identifier

351745 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	357 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABM24796.1
Molecular function	Glycosidase EMBL ABM24796.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	arabinan endo-1,5-alpha-L-arabinosidase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 37	37	Potential EMBL ABM24796.1
	Chain	38 – 357	320	Potential EMBL ABM24796.1		PRO_5000204001

Sequences

	Sequence		Length	Mass (Da)
	A1RJF1 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: D7D6CE8C92E51631	FASTA	357	39,917
	10 20 30 40 50 60 MLRISITARK HLKRHMNKLH CALLIGLMGS IGSVNAKQVS IHDPVMAKEA GNYYLFSTGP 70 80 90 100 110 120 GITYYASTDK VHWTLAGRVF DTEPTWARGV APDFNGHLWA PDIIEHDGYF YLYYSISAFG 130 140 150 160 170 180 KNTSAIGVAV NKTLDKNSKD YQWVDKGMVL ESIPHRDAWN AIDPNIIVDE KGAPWMSFGS 190 200 210 220 230 240 FWQGLKLVKL NQDFISLAKP EEWHTLAKLE RPALLNDAEP GPAQIEAPFI YKKDDYYYLF 250 260 270 280 290 300 VSYGLCCRAD DSTYHLAIGR STSVTGPYLD KEGKDMAQGG GSVLLRGTKA WPGLGHNSVY 310 320 330 340 350 QFEGKDYLVF HAYESADKGL QKLKIAELTW NTQGWPVVDP NALTQYKSVL VDPIGNK

References

[1]

"Complete sequence of Shewanella sp. W3-18-1." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Lykidis A., Tiedje J., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: W3-18-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000503 Genomic DNA. Translation: ABM24796.1.
RefSeq	YP_963350.1. NC_008750.1.
3D structure databases
ProteinModelPortal	A1RJF1.
SMR	A1RJF1. Positions 36-348.
ModBase	Search...
Protein-protein interaction databases
STRING	A1RJF1.
Protein family/group databases
CAZy	GH43. Glycoside Hydrolase Family 43.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4660594.
GenomeReviews	Gene locus Sputw3181_1961 in contig CP000503_GR.
KEGG	shw:Sputw3181_1961.
NMPDR	fig|351745.7.peg.1843.
PATRIC	23597559. VBISheSp103602_2040.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3507.
HOGENOM	HBG346382.
OMA	ARTRNDI.
ProtClustDB	CLSK845535.
Family and domain databases
InterPro	IPR006710. Glyco_hydro_43. IPR023296. Glyco_hydro_43_beta-prop. IPR016840. Glyco_hydro_43_endo_a_Ara-ase. [Graphical view]
Gene3D	G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.
KO	K06113.
PANTHER	PTHR22925. Glyco_hydro_43. 1 hit.
Pfam	PF04616. Glyco_hydro_43. 1 hit. [Graphical view]
PIRSF	PIRSF026534. Endo_alpha-L-arabinosidase. 1 hit.
SUPFAM	SSF75005. Glyco_hydro_43_beta-prop. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A1RJF1_SHESW

Accession

Primary (citable) accession number: A1RJF1

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	December 14, 2011
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)