Unreviewed,
UniProtKB/TrEMBL A1RJD9 (A1RJD9_SHESW)
Last modified
March 2, 2010.
Version 15.
History...
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Names and origin · Protein attributes · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information
Names and origin
| Protein names | Submitted name: Glycoside hydrolase, family 43 EMBL ABM24784.1 | ||
| Gene names |
| ||
| Organism | Shewanella sp. (strain W3-18-1) [Complete proteome] [HAMAP] | ||
| Taxonomic identifier | 351745 [NCBI] | ||
| Taxonomic lineage | Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella |
Protein attributes
| Sequence length | 311 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Inferred from homology. |
Ontologies
| Keywords | |
|---|---|
| Domain | Signal EMBL ABM24784.1 |
| Molecular function | Hydrolase EMBL ABM24784.1 |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro |
| Molecular function | hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||
Molecule processing | ||||||||
|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 19 | 19 | Potential EMBL ABM24784.1 | |||||
| Chain | 20 – 311 | 292 | Potential EMBL ABM24784.1 | PRO_5000203996 | ||||
Sequences
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References
| [1] | "Complete sequence of Shewanella sp. W3-18-1." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.  Richardson P.Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | CP000503 Genomic DNA. Translation: ABM24784.1. |
| RefSeq | YP_963338.1. |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | A1RJD9. |
Genome annotation databases | |
| GeneID | 4660504. |
| GenomeReviews | Gene locus Sputw3181_1949 in contig CP000503_GR. |
| KEGG | shw:Sputw3181_1949. |
| NMPDR | fig|351745.7.peg.1831. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | NOG26186. |
| HOGENOM | HBG585375. |
| OMA | ALITNDM. |
| ProtClustDB | CLSK822159. |
Family and domain databases | |
| InterPro | IPR006710. Glyco_hydro_43. [Graphical view] |
| PANTHER | PTHR22925. Glyco_hydro_43. 1 hit. |
| Pfam | PF04616. Glyco_hydro_43. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | A1RJD9_SHESW | ||||||||
| Accession | Primary (citable) accession number: A1RJD9 | ||||||||
| Entry history |
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| Entry status | Unreviewed (UniProtKB/TrEMBL) | ||||||||
