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A1RJD6 (ARAA_SHESW) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
L-arabinose isomerase
EC=5.3.1.4
Gene names
Name:araA
Ordered Locus Names:Sputw3181_1946
OrganismShewanella sp. (strain W3-18-1) [Complete proteome] [HAMAP]
Taxonomic identifier351745 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length500 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the conversion of L-arabinose to L-ribulose By similarity. HAMAP MF_00519

Catalytic activity

L-arabinose = L-ribulose. HAMAP MF_00519

Cofactor

Binds 1 manganese ion per subunit By similarity. HAMAP MF_00519

Pathway

Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. HAMAP MF_00519

Sequence similarities

Belongs to the arabinose isomerase family.

Sequence caution

The sequence ABM24781.1 differs from that shown. Reason: Erroneous initiation.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 500500L-arabinose isomerase HAMAP MF_00519
PRO_0000312620

Sites

Metal binding3061Manganese By similarity
Metal binding3331Manganese By similarity
Metal binding3491Manganese By similarity
Metal binding4481Manganese By similarity

Sequences

Sequence LengthMass (Da)Tools
A1RJD6 [UniParc].

Last modified December 4, 2007. Version 2.
Checksum: 44AB0CA45785A47B

FASTA50055,640
        10         20         30         40         50         60 
MKAFKQKQVW FVTGSQDLYG PKVLEQVAKN SEQIVNGFNQ SDAISMEVVY KPTVKSPREI 

        70         80         90        100        110        120 
YAVCQAANSD ENCVGIILWM HTFSPAKMWI AGLNELSKPF MHLHTQFNAE LPWADINMNY 

       130        140        150        160        170        180 
MNTHQSAHGC REFGYIGTRM RKERKVVVGH WQTNDVQAQV DDWCRAAAGW NESQNLRIAR 

       190        200        210        220        230        240 
FGDNMRQVAV TEGDKVAAQI QFGYEVHAYS LGELNDAINA ISENDITAQI DRYASEYIIS 

       250        260        270        280        290        300 
NELFNDEYQL DRLRKEAKIE LGLAQFLKDG EFGAFTNCFE NLTGMTGLPG LATQRLMANG 

       310        320        330        340        350        360 
IGYGGEGDWK TAAMVRIMKV MGQGRVGGTS FMEDYTYNFG ATDQVLGAHM LEVCPSIAAS 

       370        380        390        400        410        420 
KPRLEVHRHT IGVRCDVPRL LFTAKAGPAI NVSTIDLGNR FRIILNELDT VTPPQDLPNL 

       430        440        450        460        470        480 
PVASALWEPR PNLSIAAAAW IHAGGAHHSA YSQAISTENI VDFAEMAGAE LVIIDADTQI 

       490        500 
RQFKNELRQN SVYYGLARGL

« Hide

References

[1]"Complete sequence of Shewanella sp. W3-18-1."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Lykidis A., Tiedje J., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: W3-18-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000503 Genomic DNA. Translation: ABM24781.1. Different initiation.
RefSeqYP_963335.1. NC_008750.1.

3D structure databases

ProteinModelPortalA1RJD6.
SMRA1RJD6. Positions 1-496.
ModBaseSearch...

Protein-protein interaction databases

STRINGA1RJD6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4660206.
GenomeReviewsGene locus Sputw3181_1946 in contig CP000503_GR.
KEGGshw:Sputw3181_1946.
PATRIC23597527. VBISheSp103602_2024.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2160.
HOGENOMHBG297198.
ProtClustDBPRK02929.

Family and domain databases

HAMAPMF_00519. Arabinose_Isome.
[Tree]
InterProIPR024664. Ara_Isoase_C.
IPR004216. Fuc/Ara_isomerase_C.
IPR009015. Fucose_isomerase_N/cen.
IPR003762. Lara_isomerase.
[Graphical view]
KOK01804.
PfamPF11762. Arabinose_Iso_C. 1 hit.
PF02610. Arabinose_Isome. 1 hit.
[Graphical view]
PIRSFPIRSF001478. L-ara_isomerase. 1 hit.
ProDomPD018364. Lara_isomerase. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50443. Fuc_isomerase_C. 1 hit.
SSF53743. Fuc_isomerase_N. 1 hit.
ProtoNetSearch...

Entry information

Entry nameARAA_SHESW
AccessionPrimary (citable) accession number: A1RJD6
Entry history
Integrated into UniProtKB/Swiss-Prot: December 4, 2007
Last sequence update: December 4, 2007
Last modified: January 25, 2012
This is version 28 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

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