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Protein

Ribosomal RNA small subunit methyltransferase F

Gene

rsmF

Organism
Shewanella sp. (strain W3-18-1)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.UniRule annotation

Catalytic activityi

S-adenosyl-L-methionine + cytosine(1407) in 16S rRNA = S-adenosyl-L-homocysteine + 5-methylcytosine(1407) in 16S rRNA.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei148S-adenosyl-L-methionineUniRule annotation1
Binding sitei175S-adenosyl-L-methionineUniRule annotation1
Binding sitei193S-adenosyl-L-methionineUniRule annotation1
Active sitei246NucleophileUniRule annotation1

GO - Molecular functioni

Keywordsi

Molecular functionMethyltransferase, RNA-binding, Transferase
Biological processrRNA processing
LigandS-adenosyl-L-methionine

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase FUniRule annotation (EC:2.1.1.178UniRule annotation)
Alternative name(s):
16S rRNA m5C1407 methyltransferaseUniRule annotation
rRNA (cytosine-C(5)-)-methyltransferase RsmFUniRule annotation
Gene namesi
Name:rsmFUniRule annotation
Ordered Locus Names:Sputw3181_1799
OrganismiShewanella sp. (strain W3-18-1)
Taxonomic identifieri351745 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002850161 – 486Ribosomal RNA small subunit methyltransferase FAdd BLAST486

Structurei

3D structure databases

ProteinModelPortaliA1RIZ0.
SMRiA1RIZ0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni124 – 130S-adenosyl-L-methionine bindingUniRule annotation7

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000218115.
KOiK11392.
OrthoDBiPOG091H02E2.

Family and domain databases

HAMAPiMF_01579. 16SrRNA_methyltr_F. 1 hit.
InterProiView protein in InterPro
IPR031341. Methyltr_RsmF_N.
IPR001678. MeTrfase_RsmB/NOP2.
IPR027391. Nol1_Nop2_Fmu_2.
IPR011023. Nop2p.
IPR023267. RCMT.
IPR023545. rRNA_ssu_MeTfrase_F.
IPR029063. SAM-dependent_MTases.
PfamiView protein in Pfam
PF01189. Methyltr_RsmB-F. 1 hit.
PF17125. Methyltr_RsmF_N. 1 hit.
PF13636. Methyltranf_PUA. 1 hit.
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00446. nop2p. 1 hit.
PROSITEiView protein in PROSITE
PS51686. SAM_MT_RSMB_NOP. 1 hit.

Sequencei

Sequence statusi: Complete.

A1RIZ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAQLNQNFID TITQELPAHL SMDDFIAACD RPLRRSIRVN TLKISADDFK
60 70 80 90 100
TLMQPKGWTF DPIPWCKDGF WISYDEEEQL GNALEHIQGL FYIQEASSML
110 120 130 140 150
PPTALFTPSA FTPSAKWQCV LDLASAPGSK TTQIAALMHN SGLLIANEYS
160 170 180 190 200
ASRVKVLHAN VLRMGASHCA LTHFDGRVFG EYLYESFDAV LIDAPCGGEG
210 220 230 240 250
TVRKDADALK HWSLNDVLAI SETQKALIES AFLALKPGGS LVYSTCTLNR
260 270 280 290 300
LENQGVCEYL KQTYGDAVQF ESLSDLFEGA ERATTPEGFL HVWPQIYDSE
310 320 330 340 350
GFFVAKLTKT ASVPRLQPEP TLQKNFPFTP ATTKQAQGIK DYFQQDLGIS
360 370 380 390 400
LPDDLIMVRD DEFWLFPHEF RDFIGRMRFQ RIGIKLADST KHGFKVRHEA
410 420 430 440 450
IIALAGKQLS PTAKTVDLSD VEAKEYLMGR DISLNTAVKA QGEVIVCYGG
460 470 480
APLGMAKHLG NRLKNNLPRD LVKDKVLLLS EQIKSL
Length:486
Mass (Da):54,101
Last modified:May 1, 2007 - v2
Checksum:i6DA1BBDAF8873EFB
GO

Sequence cautioni

The sequence ABM24635 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000503 Genomic DNA. Translation: ABM24635.1. Different initiation.

Genome annotation databases

EnsemblBacteriaiABM24635; ABM24635; Sputw3181_1799.
KEGGishw:Sputw3181_1799.

Similar proteinsi

Entry informationi

Entry nameiRSMF_SHESW
AccessioniPrimary (citable) accession number: A1RIZ0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 1, 2007
Last sequence update: May 1, 2007
Last modified: June 7, 2017
This is version 69 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program