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A1RGJ1 (A1RGJ1_SHESW) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 2 HAMAP MF_00163
Short name=PDF 2 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 2 HAMAP MF_00163
Gene names
Name:def2 HAMAP MF_00163
Ordered Locus Names:Sputw3181_0936
OrganismShewanella sp. (strain W3-18-1) [Complete proteome] [HAMAP] EMBL ABM23786.1
Taxonomic identifier351745 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length181 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1521 By similarity HAMAP MF_00163
Metal binding1091Iron By similarity HAMAP MF_00163
Metal binding1511Iron By similarity HAMAP MF_00163
Metal binding1551Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
A1RGJ1 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: CAFF43D9F73AAB5A

FASTA18120,285
        10         20         30         40         50         60 
MFRDEKLKEM SAPLPIAQYG EAILRQTAIE VRQFDAKLTH LAEQMSASMM AAKGVGIAAP 

        70         80         90        100        110        120 
QVHSPLAMFI MASRPNARYP DAPHMAPVVV VNPQILNVSD ELNAGEEGCL SVPEQRFIIP 

       130        140        150        160        170        180 
RHDRIEVRYQ NLQGEWQQAV LSGFIARIFQ HEFDHLQGIT LLERSHIPID SKYTVTEGNA 


Q

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References

[1]"Complete sequence of Shewanella sp. W3-18-1."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Lykidis A., Tiedje J., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: W3-18-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000503 Genomic DNA. Translation: ABM23786.1.
RefSeqYP_962340.1. NC_008750.1.

3D structure databases

ProteinModelPortalA1RGJ1.
ModBaseSearch...

Protein-protein interaction databases

STRINGA1RGJ1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4659006.
GenomeReviewsGene locus Sputw3181_0936 in contig CP000503_GR.
KEGGshw:Sputw3181_0936.
PATRIC23595341. VBISheSp103602_0974.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0242.
HOGENOMHBG665227.
OMAIRYEGFD.
ProtClustDBCLSK906069.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA1RGJ1_SHESW
AccessionPrimary (citable) accession number: A1RGJ1
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: December 14, 2011
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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