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Protein

DNA-directed RNA polymerase subunit beta'

Gene

rpoC

Organism
Shewanella sp. (strain W3-18-1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciSSP351745:GCOY-157-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
Short name:
RNAP subunit beta'UniRule annotation
Alternative name(s):
RNA polymerase subunit beta'UniRule annotation
Transcriptase subunit beta'UniRule annotation
Gene namesi
Name:rpoCUniRule annotation
Ordered Locus Names:Sputw3181_0150
OrganismiShewanella sp. (strain W3-18-1)
Taxonomic identifieri351745 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14051405DNA-directed RNA polymerase subunit beta'PRO_0000308882Add
BLAST

Proteomic databases

PRIDEiA1REA8.

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliA1REA8.
SMRiA1REA8. Positions 944-1128.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RNA polymerase beta' chain family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0086.
HOGENOMiHOG000218386.
KOiK03046.
OMAiDCGTERG.
OrthoDBiEOG6M9DS6.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

Sequencei

Sequence statusi: Complete.

A1REA8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKDLLKFLKQ QSKTEEFNGI KIGLASPDLI RSWSFGEVKK PETINYRTFK
60 70 80 90 100
PEREGLFCAR IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE
110 120 130 140 150
RMGHIELASP VAHIWFLKSL PSRIGLMLDM TLRDIERVLY FESFVVIEPG
160 170 180 190 200
MTSLERGQML TEETYLDALE EYGDEFEAKM GAEAVLELLR AIDLAKEIEQ
210 220 230 240 250
MREELPSINS ETRRKKVTKR LKLMEAFFTS GNKPEWMILK VLPVLPPDLR
260 270 280 290 300
PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
310 320 330 340 350
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS
360 370 380 390 400
GRSVITVGPT LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKM
410 420 430 440 450
VEREVAEVWD VLDEVIREHP VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH
460 470 480 490 500
PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA RALMMSTNNI LSPANGEPVI
510 520 530 540 550
TPSQDVVLGL YYTSRERING RGEGMAFMSV AEVEKAYATG AAELHARVKV
560 570 580 590 600
RITETIIGDD GERTEQRRIV DTTVGRALLS LILPAGLSFD LVNQNMGKKQ
610 620 630 640 650
ISKLLNTCYR QLGLKDTVIF ADQLMYTGFR FATISGASVG IDDMVIPDEK
660 670 680 690 700
YTLVADAEAE VLEIQEQFQS GLVTAGERYN KVIDIWASAN EKVSKAMMEN
710 720 730 740 750
LSTETVINRD GVEEKQASFN SIYMMADSGA RGSAAQIRQL AGMRGLMAKP
760 770 780 790 800
DGSIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL
810 820 830 840 850
VDVAQDLVVI EDDCGTHEGL TMKPLIEGGD VVEPLRERVL GRVVAVDVFY
860 870 880 890 900
PGTEDVLAPR NTLLDEAWCD KLEEHSIDEV IVRSVITCDT DFGVCAACYG
910 920 930 940 950
RDLARGHIIN HGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV
960 970 980 990 1000
QVKNSGSLKL HNAKHVTNSD GKLVIVSRSS ELAIIDELGR EKERYKVPYG
1010 1020 1030 1040 1050
TVLEKLEEAA VEAGDIIANW DPHTHPIISE VAGSIKFVDM IDGVTMTRQT
1060 1070 1080 1090 1100
DELTGLSSIV ILDVGQRGTA GKEMRPMIRL LGANGSDLMI PGTEVPAQYF
1110 1120 1130 1140 1150
LPGSAIVNLD DNAQIAVGDA LARIPQESSK TRDITGGLPR VADLFEARKP
1160 1170 1180 1190 1200
KEPAILAEIS GTISFGKETK GKRRLVITPA DGGDQYEEMI PKWRNLNVFE
1210 1220 1230 1240 1250
GEKVERGEVI ADGPEAAHDI LRLRGIHNVA NYIVNEVQDV YRLQGVKIND
1260 1270 1280 1290 1300
KHIEVIIRQM LRKCLITSAG DTEFLEGEQV EVSRVKIANR ELIAQGKVPA
1310 1320 1330 1340 1350
TFERELLGIT KASLATESFI SAASFQETTR VLTEAAVGGK SDQLRGLKEN
1360 1370 1380 1390 1400
VIVGRLIPAG TGYAYHKTRN DARAKKDEPV VVNKVTASEA EQNLADLLNM

AGSQD
Length:1,405
Mass (Da):155,298
Last modified:February 6, 2007 - v1
Checksum:iB5EA18D00A1330AB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000503 Genomic DNA. Translation: ABM23003.1.
RefSeqiWP_011787568.1. NC_008750.1.

Genome annotation databases

EnsemblBacteriaiABM23003; ABM23003; Sputw3181_0150.
KEGGishw:Sputw3181_0150.
PATRICi23593675. VBISheSp103602_0155.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000503 Genomic DNA. Translation: ABM23003.1.
RefSeqiWP_011787568.1. NC_008750.1.

3D structure databases

ProteinModelPortaliA1REA8.
SMRiA1REA8. Positions 944-1128.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiA1REA8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABM23003; ABM23003; Sputw3181_0150.
KEGGishw:Sputw3181_0150.
PATRICi23593675. VBISheSp103602_0155.

Phylogenomic databases

eggNOGiCOG0086.
HOGENOMiHOG000218386.
KOiK03046.
OMAiDCGTERG.
OrthoDBiEOG6M9DS6.

Enzyme and pathway databases

BioCyciSSP351745:GCOY-157-MONOMER.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: W3-18-1.

Entry informationi

Entry nameiRPOC_SHESW
AccessioniPrimary (citable) accession number: A1REA8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: February 6, 2007
Last modified: July 22, 2015
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.