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A1REA8

- RPOC_SHESW

UniProt

A1REA8 - RPOC_SHESW

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Protein

DNA-directed RNA polymerase subunit beta'

Gene
rpoC, Sputw3181_0150
Organism
Shewanella sp. (strain W3-18-1)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates By similarity.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciSSP351745:GCOY-157-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
Short name:
RNAP subunit beta'
Alternative name(s):
RNA polymerase subunit beta'
Transcriptase subunit beta'
Gene namesi
Name:rpoC
Ordered Locus Names:Sputw3181_0150
OrganismiShewanella sp. (strain W3-18-1)
Taxonomic identifieri351745 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000002597: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14051405DNA-directed RNA polymerase subunit beta'UniRule annotationPRO_0000308882Add
BLAST

Proteomic databases

PRIDEiA1REA8.

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription By similarity.

Protein-protein interaction databases

STRINGi351745.Sputw3181_0150.

Structurei

3D structure databases

ProteinModelPortaliA1REA8.
SMRiA1REA8. Positions 944-1128.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0086.
HOGENOMiHOG000218386.
KOiK03046.
OMAiYDLVNQN.
OrthoDBiEOG6M9DS6.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

Sequencei

Sequence statusi: Complete.

A1REA8-1 [UniParc]FASTAAdd to Basket

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MKDLLKFLKQ QSKTEEFNGI KIGLASPDLI RSWSFGEVKK PETINYRTFK     50
PEREGLFCAR IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE 100
RMGHIELASP VAHIWFLKSL PSRIGLMLDM TLRDIERVLY FESFVVIEPG 150
MTSLERGQML TEETYLDALE EYGDEFEAKM GAEAVLELLR AIDLAKEIEQ 200
MREELPSINS ETRRKKVTKR LKLMEAFFTS GNKPEWMILK VLPVLPPDLR 250
PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ 300
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS 350
GRSVITVGPT LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKM 400
VEREVAEVWD VLDEVIREHP VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH 450
PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA RALMMSTNNI LSPANGEPVI 500
TPSQDVVLGL YYTSRERING RGEGMAFMSV AEVEKAYATG AAELHARVKV 550
RITETIIGDD GERTEQRRIV DTTVGRALLS LILPAGLSFD LVNQNMGKKQ 600
ISKLLNTCYR QLGLKDTVIF ADQLMYTGFR FATISGASVG IDDMVIPDEK 650
YTLVADAEAE VLEIQEQFQS GLVTAGERYN KVIDIWASAN EKVSKAMMEN 700
LSTETVINRD GVEEKQASFN SIYMMADSGA RGSAAQIRQL AGMRGLMAKP 750
DGSIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL 800
VDVAQDLVVI EDDCGTHEGL TMKPLIEGGD VVEPLRERVL GRVVAVDVFY 850
PGTEDVLAPR NTLLDEAWCD KLEEHSIDEV IVRSVITCDT DFGVCAACYG 900
RDLARGHIIN HGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV 950
QVKNSGSLKL HNAKHVTNSD GKLVIVSRSS ELAIIDELGR EKERYKVPYG 1000
TVLEKLEEAA VEAGDIIANW DPHTHPIISE VAGSIKFVDM IDGVTMTRQT 1050
DELTGLSSIV ILDVGQRGTA GKEMRPMIRL LGANGSDLMI PGTEVPAQYF 1100
LPGSAIVNLD DNAQIAVGDA LARIPQESSK TRDITGGLPR VADLFEARKP 1150
KEPAILAEIS GTISFGKETK GKRRLVITPA DGGDQYEEMI PKWRNLNVFE 1200
GEKVERGEVI ADGPEAAHDI LRLRGIHNVA NYIVNEVQDV YRLQGVKIND 1250
KHIEVIIRQM LRKCLITSAG DTEFLEGEQV EVSRVKIANR ELIAQGKVPA 1300
TFERELLGIT KASLATESFI SAASFQETTR VLTEAAVGGK SDQLRGLKEN 1350
VIVGRLIPAG TGYAYHKTRN DARAKKDEPV VVNKVTASEA EQNLADLLNM 1400
AGSQD 1405
Length:1,405
Mass (Da):155,298
Last modified:February 6, 2007 - v1
Checksum:iB5EA18D00A1330AB
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000503 Genomic DNA. Translation: ABM23003.1.
RefSeqiYP_961557.1. NC_008750.1.

Genome annotation databases

EnsemblBacteriaiABM23003; ABM23003; Sputw3181_0150.
GeneIDi4660327.
KEGGishw:Sputw3181_0150.
PATRICi23593675. VBISheSp103602_0155.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000503 Genomic DNA. Translation: ABM23003.1 .
RefSeqi YP_961557.1. NC_008750.1.

3D structure databases

ProteinModelPortali A1REA8.
SMRi A1REA8. Positions 944-1128.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 351745.Sputw3181_0150.

Proteomic databases

PRIDEi A1REA8.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABM23003 ; ABM23003 ; Sputw3181_0150 .
GeneIDi 4660327.
KEGGi shw:Sputw3181_0150.
PATRICi 23593675. VBISheSp103602_0155.

Phylogenomic databases

eggNOGi COG0086.
HOGENOMi HOG000218386.
KOi K03046.
OMAi YDLVNQN.
OrthoDBi EOG6M9DS6.

Enzyme and pathway databases

BioCyci SSP351745:GCOY-157-MONOMER.

Family and domain databases

HAMAPi MF_01322. RNApol_bact_RpoC.
InterProi IPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view ]
Pfami PF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view ]
SMARTi SM00663. RPOLA_N. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02386. rpoC_TIGR. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: W3-18-1.

Entry informationi

Entry nameiRPOC_SHESW
AccessioniPrimary (citable) accession number: A1REA8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: February 6, 2007
Last modified: May 14, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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