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A1REA8

- RPOC_SHESW

UniProt

A1REA8 - RPOC_SHESW

Protein

DNA-directed RNA polymerase subunit beta'

Gene

rpoC

Organism
Shewanella sp. (strain W3-18-1)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 48 (01 Oct 2014)
      Sequence version 1 (06 Feb 2007)
      Previous versions | rss
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    Functioni

    DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

    Catalytic activityi

    Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-HAMAP
    2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Nucleotidyltransferase, Transferase

    Keywords - Biological processi

    Transcription

    Enzyme and pathway databases

    BioCyciSSP351745:GCOY-157-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
    Short name:
    RNAP subunit beta'UniRule annotation
    Alternative name(s):
    RNA polymerase subunit beta'UniRule annotation
    Transcriptase subunit beta'UniRule annotation
    Gene namesi
    Name:rpoCUniRule annotation
    Ordered Locus Names:Sputw3181_0150
    OrganismiShewanella sp. (strain W3-18-1)
    Taxonomic identifieri351745 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    ProteomesiUP000002597: Chromosome

    Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymerase

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 14051405DNA-directed RNA polymerase subunit beta'PRO_0000308882Add
    BLAST

    Proteomic databases

    PRIDEiA1REA8.

    Interactioni

    Subunit structurei

    The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

    Protein-protein interaction databases

    STRINGi351745.Sputw3181_0150.

    Structurei

    3D structure databases

    ProteinModelPortaliA1REA8.
    SMRiA1REA8. Positions 944-1128.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RNA polymerase beta' chain family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0086.
    HOGENOMiHOG000218386.
    KOiK03046.
    OMAiYDLVNQN.
    OrthoDBiEOG6M9DS6.

    Family and domain databases

    HAMAPiMF_01322. RNApol_bact_RpoC.
    InterProiIPR012754. DNA-dir_RpoC_beta_prime.
    IPR000722. RNA_pol_asu.
    IPR006592. RNA_pol_N.
    IPR007080. RNA_pol_Rpb1_1.
    IPR007066. RNA_pol_Rpb1_3.
    IPR007083. RNA_pol_Rpb1_4.
    IPR007081. RNA_pol_Rpb1_5.
    [Graphical view]
    PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
    PF00623. RNA_pol_Rpb1_2. 1 hit.
    PF04983. RNA_pol_Rpb1_3. 1 hit.
    PF05000. RNA_pol_Rpb1_4. 1 hit.
    PF04998. RNA_pol_Rpb1_5. 1 hit.
    [Graphical view]
    SMARTiSM00663. RPOLA_N. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A1REA8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKDLLKFLKQ QSKTEEFNGI KIGLASPDLI RSWSFGEVKK PETINYRTFK     50
    PEREGLFCAR IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE 100
    RMGHIELASP VAHIWFLKSL PSRIGLMLDM TLRDIERVLY FESFVVIEPG 150
    MTSLERGQML TEETYLDALE EYGDEFEAKM GAEAVLELLR AIDLAKEIEQ 200
    MREELPSINS ETRRKKVTKR LKLMEAFFTS GNKPEWMILK VLPVLPPDLR 250
    PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ 300
    ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS 350
    GRSVITVGPT LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKM 400
    VEREVAEVWD VLDEVIREHP VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH 450
    PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA RALMMSTNNI LSPANGEPVI 500
    TPSQDVVLGL YYTSRERING RGEGMAFMSV AEVEKAYATG AAELHARVKV 550
    RITETIIGDD GERTEQRRIV DTTVGRALLS LILPAGLSFD LVNQNMGKKQ 600
    ISKLLNTCYR QLGLKDTVIF ADQLMYTGFR FATISGASVG IDDMVIPDEK 650
    YTLVADAEAE VLEIQEQFQS GLVTAGERYN KVIDIWASAN EKVSKAMMEN 700
    LSTETVINRD GVEEKQASFN SIYMMADSGA RGSAAQIRQL AGMRGLMAKP 750
    DGSIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL 800
    VDVAQDLVVI EDDCGTHEGL TMKPLIEGGD VVEPLRERVL GRVVAVDVFY 850
    PGTEDVLAPR NTLLDEAWCD KLEEHSIDEV IVRSVITCDT DFGVCAACYG 900
    RDLARGHIIN HGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV 950
    QVKNSGSLKL HNAKHVTNSD GKLVIVSRSS ELAIIDELGR EKERYKVPYG 1000
    TVLEKLEEAA VEAGDIIANW DPHTHPIISE VAGSIKFVDM IDGVTMTRQT 1050
    DELTGLSSIV ILDVGQRGTA GKEMRPMIRL LGANGSDLMI PGTEVPAQYF 1100
    LPGSAIVNLD DNAQIAVGDA LARIPQESSK TRDITGGLPR VADLFEARKP 1150
    KEPAILAEIS GTISFGKETK GKRRLVITPA DGGDQYEEMI PKWRNLNVFE 1200
    GEKVERGEVI ADGPEAAHDI LRLRGIHNVA NYIVNEVQDV YRLQGVKIND 1250
    KHIEVIIRQM LRKCLITSAG DTEFLEGEQV EVSRVKIANR ELIAQGKVPA 1300
    TFERELLGIT KASLATESFI SAASFQETTR VLTEAAVGGK SDQLRGLKEN 1350
    VIVGRLIPAG TGYAYHKTRN DARAKKDEPV VVNKVTASEA EQNLADLLNM 1400
    AGSQD 1405
    Length:1,405
    Mass (Da):155,298
    Last modified:February 6, 2007 - v1
    Checksum:iB5EA18D00A1330AB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000503 Genomic DNA. Translation: ABM23003.1.
    RefSeqiYP_961557.1. NC_008750.1.

    Genome annotation databases

    EnsemblBacteriaiABM23003; ABM23003; Sputw3181_0150.
    GeneIDi4660327.
    KEGGishw:Sputw3181_0150.
    PATRICi23593675. VBISheSp103602_0155.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000503 Genomic DNA. Translation: ABM23003.1 .
    RefSeqi YP_961557.1. NC_008750.1.

    3D structure databases

    ProteinModelPortali A1REA8.
    SMRi A1REA8. Positions 944-1128.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 351745.Sputw3181_0150.

    Proteomic databases

    PRIDEi A1REA8.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABM23003 ; ABM23003 ; Sputw3181_0150 .
    GeneIDi 4660327.
    KEGGi shw:Sputw3181_0150.
    PATRICi 23593675. VBISheSp103602_0155.

    Phylogenomic databases

    eggNOGi COG0086.
    HOGENOMi HOG000218386.
    KOi K03046.
    OMAi YDLVNQN.
    OrthoDBi EOG6M9DS6.

    Enzyme and pathway databases

    BioCyci SSP351745:GCOY-157-MONOMER.

    Family and domain databases

    HAMAPi MF_01322. RNApol_bact_RpoC.
    InterProi IPR012754. DNA-dir_RpoC_beta_prime.
    IPR000722. RNA_pol_asu.
    IPR006592. RNA_pol_N.
    IPR007080. RNA_pol_Rpb1_1.
    IPR007066. RNA_pol_Rpb1_3.
    IPR007083. RNA_pol_Rpb1_4.
    IPR007081. RNA_pol_Rpb1_5.
    [Graphical view ]
    Pfami PF04997. RNA_pol_Rpb1_1. 1 hit.
    PF00623. RNA_pol_Rpb1_2. 1 hit.
    PF04983. RNA_pol_Rpb1_3. 1 hit.
    PF05000. RNA_pol_Rpb1_4. 1 hit.
    PF04998. RNA_pol_Rpb1_5. 1 hit.
    [Graphical view ]
    SMARTi SM00663. RPOLA_N. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02386. rpoC_TIGR. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: W3-18-1.

    Entry informationi

    Entry nameiRPOC_SHESW
    AccessioniPrimary (citable) accession number: A1REA8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 23, 2007
    Last sequence update: February 6, 2007
    Last modified: October 1, 2014
    This is version 48 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3