Reviewed,
UniProtKB/Swiss-Prot A1RAY5 (ARAA_ARTAT)
Last modified
November 3, 2009.
Version 19.
History...
Clusters with 100%,
90%,
50% identity |
Documents (2) |
Third-party data |
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Names and origin
| Protein names | Recommended name: L-arabinose isomerase EC=5.3.1.4 | ||||
| Gene names |
| ||||
| Organism | Arthrobacter aurescens (strain TC1) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 290340 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Micrococcaceae › Arthrobacter |
Protein attributes
| Sequence length | 511 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Inferred from homology. |
General annotation (Comments)
| Function | Catalyzes the conversion of L-arabinose to L-ribulose By similarity. |
| Catalytic activity | L-arabinose = L-ribulose. HAMAP MF_00519 |
| Cofactor | Binds 1 manganese ion per subunit By similarity. |
| Pathway | Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. HAMAP MF_00519 |
| Sequence similarities | Belongs to the arabinose isomerase family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Arabinose catabolism Carbohydrate metabolism |
| Ligand | Manganese Metal-binding |
| Molecular function | Isomerase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | arabinose catabolic process Inferred from electronic annotation. Source: HAMAP |
| Molecular function | L-arabinose isomerase activity Inferred from electronic annotation. Source: HAMAP manganese ion bindingInferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 511 | 511 | L-arabinose isomerase HAMAP MF_00519 | PRO_0000312599 | |||||
Sites | |||||||||
| Metal binding | 316 | 1 | Manganese By similarity | ||||||
| Metal binding | 343 | 1 | Manganese By similarity | ||||||
| Metal binding | 360 | 1 | Manganese By similarity | ||||||
| Metal binding | 459 | 1 | Manganese By similarity | ||||||
Sequences
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References
| [1] | "Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1." Mongodin E.F., Shapir N., Daugherty S.C., DeBoy R.T., Emerson J.B., Shvartzbeyn A., Radune D., Vamathevan J., Riggs F., Grinberg V., Khouri H.M., Wackett L.P., Nelson K.E., Sadowsky M.J. PLoS Genet. 2:2094-2106(2006) [PubMed: 17194220] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
Cross-references
Sequence databases | |
|---|---|
| CP000474 Genomic DNA. Translation: ABM06985.1. | |
| RefSeq | YP_949397.1. |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | A1RAY5. |
Genome annotation databases | |
| GeneID | 4638955. |
| GenomeReviews | Gene locus AAur_3711 in contig CP000474_GR. |
| KEGG | aau:AAur_3711. |
| TIGR | AAur_3711. |
Phylogenomic databases | |
| OMA | EVCPTIA. |
Family and domain databases | |
| HAMAP | MF_00519. [Tree] |
| InterPro | IPR003762. Lara_isomerase. [Graphical view] |
| Pfam | PF02610. Arabinose_Isome. 1 hit. [Graphical view] |
| PIRSF | PIRSF001478. L-ara_isomerase. 1 hit. |
| ProDom | PD018364. Lara_isomerase. 1 hit. [Graphical view] [Entries sharing at least one domain] |
| ProtoNet | Search... |
Entry information
| Entry name | ARAA_ARTAT | ||||||||
| Accession | Primary (citable) accession number: A1RAY5 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes) | ||||||||
Relevant documents
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

Clusters with


