A1R392 (A1R392_ARTAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
1,4-alpha-glucan branching enzyme GlgB HAMAP MF_00685
EC=2.4.1.18 HAMAP MF_00685

Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase HAMAP MF_00685
Alpha-(1->4)-glucan branching enzyme HAMAP MF_00685
Glycogen branching enzyme HAMAP MF_00685

Gene names

Name:	glgB HAMAP MF_00685
Ordered Locus Names:	AAur_0910

Organism

Arthrobacter aurescens (strain TC1) [Complete proteome] [HAMAP] EMBL ABM08529.1

Taxonomic identifier

290340 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Micrococcaceae › Arthrobacter

Protein attributes

Sequence length	736 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity. HAMAP MF_00685
Catalytic activity	Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain. HAMAP MF_00685 SAAS SAAS006407
Pathway	Glycan biosynthesis; glycogen biosynthesis. HAMAP MF_00685 SAAS SAAS006407
Subunit structure	Monomer By similarity. HAMAP MF_00685
Sequence similarities	Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. HAMAP MF_00685

Ontologies

Keywords
Biological process	Carbohydrate metabolism Glycogen biosynthesis HAMAP MF_00685 SAAS SAAS006407 Glycogen metabolism HAMAP MF_00685
Molecular function	Glycosyltransferase HAMAP MF_00685 SAAS SAAS006407 EMBL ABM08529.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycogen biosynthetic process Inferred from electronic annotation. Source: HAMAP
Molecular function	1,4-alpha-glucan branching enzyme activity Inferred from electronic annotation. Source: HAMAP cation binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	416	1	Nucleophile By similarity HAMAP MF_00685
	Active site	469	1	Proton donor By similarity HAMAP MF_00685

Sequences

	Sequence		Length	Mass (Da)
	A1R392 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: 7EAC32FEEF91F04B	FASTA	736	81,812
	10 20 30 40 50 60 MTGSARTERP RVPLHVDSET LERVAAGAYH APHSVLGAHL DDHGHVTIRT VKHLAKSVVV 70 80 90 100 110 120 VTEAGRSDMT HEAHGVWAAV LEPLQAGHVP DYRLEVVYDA EPVTIDDPYH YLPTVGEVDL 130 140 150 160 170 180 HLIGEGRHER LWDVLGAHVQ HYRSALSEVD GVSFAVWAPN AQAVRVKGDF NGWDGRQHGM 190 200 210 220 230 240 RSLGSSGVWE LFIPGVVAGA CYKYEILTKA GQWVEKADPM AFGTEVPPLT ASRVVDASYR 250 260 270 280 290 300 FKDAEWMSAR AQRDPHNSPM SVYEVHLGSW RLGLGYKELA KELVDYVKWL GFSHVEFMPV 310 320 330 340 350 360 AEHPFGGSWG YQVTSYFAPT SRFGHPDEFR FLVDSLHQAG IGVLLDWVPA HFPKDSWALA 370 380 390 400 410 420 QFDGQPLYEH SDPALGEHPD WGTLIFDFGR SEVRNFLVAN ALYWLEEFHI DGLRVDAVAS 430 440 450 460 470 480 MIYLDYSREE GQWRPNKFGG RENLEAISFM QEVNATVYKS HPGAIIIAEE STAFPGVTAP 490 500 510 520 530 540 TNHGGLGFGL KWNMGWMHDS LKYISEDPIN RKWHHGTITF SLVYAFTENF LLPISHDEVV 550 560 570 580 590 600 HGKGSMLRKM PGDRWQQLAN LRAFFAYQWA HPGKQLIFMG TEFGQEAEWS EQYGLDWFLA 610 620 630 640 650 660 EIPAHRGLQL LVKDLNELYT STPALYQRDN EPGGFQWING GDADHNVLTF IRWDGDGKPL 670 680 690 700 710 720 VCAVNFSGGP HKDYILGVPA AGEWTEVLNT DSETYGGSGV GNPGSLKAST PGTDGQPAAL 730 TVTLPPLGAS WFAPAE

References

[1]

"Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1." Mongodin E.F., Shapir N., Daugherty S.C., DeBoy R.T., Emerson J.B., Shvartzbeyn A., Radune D., Vamathevan J., Riggs F., Grinberg V., Khouri H.M., Wackett L.P., Nelson K.E., Sadowsky M.J. PLoS Genet. 2:2094-2106(2006) [PubMed: 17194220] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000474 Genomic DNA. Translation: ABM08529.1.
RefSeq	YP_946704.2. NC_008711.1.
3D structure databases
ProteinModelPortal	A1R392.
ModBase	Search...
Protein-protein interaction databases
STRING	A1R392.
Protein family/group databases
CAZy	CBM48. Carbohydrate-Binding Module Family 48. GH13. Glycoside Hydrolase Family 13.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4641303.
GenomeReviews	Gene locus AAur_0910 in contig CP000474_GR.
KEGG	aau:AAur_0910.
PATRIC	20977154. VBIArtAur67810_0924.
TIGR	AAur_0910.
Phylogenomic databases
eggNOG	COG0296.
HOGENOM	HBG287139.
OMA	DGTCLYE.
ProtClustDB	PRK14705.
Family and domain databases
HAMAP	MF_00685. GlgB. [Tree]
InterPro	IPR006407. 1-4-A-glucan_branch_enz. IPR006048. A-amylase_b_C. IPR015902. Alpha_amylase. IPR013780. Glyco_hydro_13_b. IPR006047. Glyco_hydro_13_cat_dom. IPR004193. Glyco_hydro_13_N. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. IPR013783. Ig-like_fold. IPR014756. Ig_E-set. [Graphical view]
Gene3D	G3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit. G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit. G3DSA:2.60.40.10. Ig-like_fold. 2 hits.
KO	K00700.
PANTHER	PTHR10357. Alpha_amylase. 1 hit. PTHR10357:SF13. PTHR10357:SF13. 1 hit.
Pfam	PF00128. Alpha-amylase. 1 hit. PF02806. Alpha-amylase_C. 1 hit. PF02922. CBM_48. 1 hit. [Graphical view]
PIRSF	PIRSF000463. GlgB. 1 hit.
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit. SSF81296. Ig_E-set. 2 hits.
TIGRFAMs	TIGR01515. Branching_enzym. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A1R392_ARTAT

Accession

Primary (citable) accession number: A1R392

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	December 14, 2011
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)