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Protein
Submitted name:

CD1D antigen, d polypeptide

Gene

CD1D

Organism
Bos taurus (Bovine)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei219Beta-D-mannoseCombined sources1

Names & Taxonomyi

Protein namesi
Submitted name:
CD1D antigen, d polypeptideImported
Gene namesi
Name:CD1DImported
OrganismiBos taurus (Bovine)Imported
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei97 – 120HelicalSequence analysisAdd BLAST24
Transmembranei413 – 435HelicalSequence analysisAdd BLAST23

Keywords - Cellular componenti

Membrane

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi148N-linked (GlcNAc...)Combined sources1
Glycosylationi170N-linked (GlcNAc...)Combined sources1
Disulfide bondi334 ↔ 389Combined sources

Proteomic databases

PaxDbiA1L565.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4F7CX-ray2.86A/C129-405[»]
4F7EX-ray2.40A129-405[»]
SMRiA1L565.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini295 – 395Ig-likeInterPro annotationAdd BLAST101

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410ITUC. Eukaryota.
ENOG4111EG6. LUCA.
HOGENOMiHOG000111666.
HOVERGENiHBG004453.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
3.30.500.10. 1 hit.
InterProiView protein in InterPro
IPR007110. Ig-like_dom.
IPR036179. Ig-like_dom_sf.
IPR013783. Ig-like_fold.
IPR003597. Ig_C1-set.
IPR011161. MHC_I-like_Ag-recog.
IPR037055. MHC_I-like_Ag-recog_sf.
IPR011162. MHC_I/II-like_Ag-recog.
PfamiView protein in Pfam
PF07654. C1-set. 1 hit.
PF16497. MHC_I_3. 1 hit.
SMARTiView protein in SMART
SM00407. IGc1. 1 hit.
SUPFAMiSSF48726. SSF48726. 1 hit.
SSF54452. SSF54452. 1 hit.
PROSITEiView protein in PROSITE
PS50835. IG_LIKE. 1 hit.

Sequencei

Sequence statusi: Fragment.

A1L565-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
DSRSESRARK WGACCFCSSG GFRRFGGVLR MSGTGLRAER GSQARKGADV
60 70 80 90 100
RGGRVETDAP RKARKLIHQP ENRLLPAFSC LIPGDGAQFR ASRHHPFFPN
110 120 130 140 150
LTVSFFFFPF LLPSVLSLPF PRLLRSVFSP APQTPFSFQG LQISSFANRS
160 170 180 190 200
WTRTDGLAWL GELQPYTWRN ESDTIRFLKP WSRGTFSDQQ WEQLQHTLLV
210 220 230 240 250
YRSSFTRDIW EFVEKLHVEY PLEIQIATGC ELLPRNISES FLRAAFQGRD
260 270 280 290 300
VLSFQGMSWV SAPDAPPFIQ EVIKVLNQNQ GTKETVHWLL HDIWPELVRG
310 320 330 340 350
VLQTGKSELE KQVKPEAWLS SGPSPGPGRL LLVCHVSGFY PKPVRVMWMR
360 370 380 390 400
GEQEEPGTRQ GDVMPNADST WYLRVTLDVA AGEVAGLSCQ VKHSSLGDQD
410 420 430 440
IILYWNGNHV SRGLIVILVL LVFVLLFVGG LVFWFRKHRR YQDIP
Length:445
Mass (Da):50,542
Last modified:February 6, 2007 - v1
Checksum:iDB90CD1C70C18184
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT029852 mRNA. Translation: ABM06107.1.
UniGeneiBt.24559.

Similar proteinsi

Entry informationi

Entry nameiA1L565_BOVIN
AccessioniPrimary (citable) accession number: A1L565
Entry historyiIntegrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: October 25, 2017
This is version 62 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources