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A1L565 (A1L565_BOVIN) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:CD1D EMBL ABM06107.1
OrganismBos taurus (Bovine) EMBL ABM06107.1
Taxonomic identifier9913 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos

Protein attributes

Sequence length445 AA.
Sequence statusFragment.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Technical term3D-structure PDB 4F7C PDB 4F7E
Gene Ontology (GO)
   Biological_processantigen processing and presentation

Inferred from electronic annotation. Source: InterPro

immune response

Inferred from electronic annotation. Source: InterPro

   Cellular_componentmembrane

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Amino acid modifications

Glycosylation1481N-linked (GlcNAc...) PDB 4F7C PDB 4F7E
Glycosylation1701N-linked (GlcNAc...) PDB 4F7C PDB 4F7E

Experimental info

Non-terminal residue11 EMBL ABM06107.1

Sequences

Sequence LengthMass (Da)Tools
A1L565 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: DB90CD1C70C18184

FASTA44550,542
        10         20         30         40         50         60 
DSRSESRARK WGACCFCSSG GFRRFGGVLR MSGTGLRAER GSQARKGADV RGGRVETDAP 

        70         80         90        100        110        120 
RKARKLIHQP ENRLLPAFSC LIPGDGAQFR ASRHHPFFPN LTVSFFFFPF LLPSVLSLPF 

       130        140        150        160        170        180 
PRLLRSVFSP APQTPFSFQG LQISSFANRS WTRTDGLAWL GELQPYTWRN ESDTIRFLKP 

       190        200        210        220        230        240 
WSRGTFSDQQ WEQLQHTLLV YRSSFTRDIW EFVEKLHVEY PLEIQIATGC ELLPRNISES 

       250        260        270        280        290        300 
FLRAAFQGRD VLSFQGMSWV SAPDAPPFIQ EVIKVLNQNQ GTKETVHWLL HDIWPELVRG 

       310        320        330        340        350        360 
VLQTGKSELE KQVKPEAWLS SGPSPGPGRL LLVCHVSGFY PKPVRVMWMR GEQEEPGTRQ 

       370        380        390        400        410        420 
GDVMPNADST WYLRVTLDVA AGEVAGLSCQ VKHSSLGDQD IILYWNGNHV SRGLIVILVL 

       430        440 
LVFVLLFVGG LVFWFRKHRR YQDIP 

« Hide

References

[1]"Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle."
Smith T.P.L., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E., Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P., Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I., Karamycheva S. expand/collapse author list , Liang F., Quackenbush J., Keele J.W.
Genome Res. 11:626-630(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Pooled EMBL ABM06107.1.
[2]"Characterization of 954 bovine full-CDS cDNA sequences."
Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L., Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.L.
BMC Genomics 6:166-166(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Pooled EMBL ABM06107.1.
[3]"Sequencing and analysis of Bos taurus full-length insert cDNA clones."
Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P., Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Pooled EMBL ABM06107.1.
[4]"Crystal structures of bovine CD1d reveal altered ?GalCer presentation and a restricted A' pocket unable to bind long-chain glycolipids."
Wang J., Guillaume J., Pauwels N., Van Calenbergh S., Van Rhijn I., Zajonc D.M.
PLoS ONE 7:e47989-e47989(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 129-405, GLYCOSYLATION AT ASN-148 AND ASN-170.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BT029852 mRNA. Translation: ABM06107.1.
UniGeneBt.24559.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4F7CX-ray2.86A/C129-405[»]
4F7EX-ray2.40A129-405[»]
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING9913.ENSBTAP00000033859.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Phylogenomic databases

eggNOGNOG26626.
HOGENOMHOG000111666.
HOVERGENHBG004453.
InParanoidA1L565.

Family and domain databases

Gene3D2.60.40.10. 1 hit.
3.30.500.10. 1 hit.
InterProIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003597. Ig_C1-set.
IPR011161. MHC_I-like_Ag-recog.
IPR011162. MHC_I/II-like_Ag-recog.
[Graphical view]
PfamPF07654. C1-set. 1 hit.
[Graphical view]
SMARTSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMSSF54452. SSF54452. 1 hit.
PROSITEPS50835. IG_LIKE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA1L565_BOVIN
AccessionPrimary (citable) accession number: A1L565
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: January 22, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)