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Protein
Submitted name:

CD1D antigen, d polypeptide

Gene

CD1D

Organism
Bos taurus (Bovine)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  1. antigen processing and presentation Source: InterPro
  2. immune response Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
CD1D antigen, d polypeptideImported
Gene namesi
Name:CD1DImported
OrganismiBos taurus (Bovine)Imported
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: InterPro
Complete GO annotation...

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi148 – 1481N-linked (GlcNAc...)Combined sources
Glycosylationi170 – 1701N-linked (GlcNAc...)Combined sources
Disulfide bondi334 ↔ 389Combined sources

Interactioni

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000033859.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4F7CX-ray2.86A/C129-405[»]
4F7EX-ray2.40A129-405[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG26626.
HOGENOMiHOG000111666.
HOVERGENiHBG004453.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
3.30.500.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003597. Ig_C1-set.
IPR011161. MHC_I-like_Ag-recog.
IPR011162. MHC_I/II-like_Ag-recog.
[Graphical view]
PfamiPF07654. C1-set. 1 hit.
[Graphical view]
SMARTiSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMiSSF54452. SSF54452. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

A1L565-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
DSRSESRARK WGACCFCSSG GFRRFGGVLR MSGTGLRAER GSQARKGADV
60 70 80 90 100
RGGRVETDAP RKARKLIHQP ENRLLPAFSC LIPGDGAQFR ASRHHPFFPN
110 120 130 140 150
LTVSFFFFPF LLPSVLSLPF PRLLRSVFSP APQTPFSFQG LQISSFANRS
160 170 180 190 200
WTRTDGLAWL GELQPYTWRN ESDTIRFLKP WSRGTFSDQQ WEQLQHTLLV
210 220 230 240 250
YRSSFTRDIW EFVEKLHVEY PLEIQIATGC ELLPRNISES FLRAAFQGRD
260 270 280 290 300
VLSFQGMSWV SAPDAPPFIQ EVIKVLNQNQ GTKETVHWLL HDIWPELVRG
310 320 330 340 350
VLQTGKSELE KQVKPEAWLS SGPSPGPGRL LLVCHVSGFY PKPVRVMWMR
360 370 380 390 400
GEQEEPGTRQ GDVMPNADST WYLRVTLDVA AGEVAGLSCQ VKHSSLGDQD
410 420 430 440
IILYWNGNHV SRGLIVILVL LVFVLLFVGG LVFWFRKHRR YQDIP
Length:445
Mass (Da):50,542
Last modified:February 6, 2007 - v1
Checksum:iDB90CD1C70C18184
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT029852 mRNA. Translation: ABM06107.1.
UniGeneiBt.24559.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT029852 mRNA. Translation: ABM06107.1.
UniGeneiBt.24559.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4F7CX-ray2.86A/C129-405[»]
4F7EX-ray2.40A129-405[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000033859.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiNOG26626.
HOGENOMiHOG000111666.
HOVERGENiHBG004453.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
3.30.500.10. 1 hit.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003597. Ig_C1-set.
IPR011161. MHC_I-like_Ag-recog.
IPR011162. MHC_I/II-like_Ag-recog.
[Graphical view]
PfamiPF07654. C1-set. 1 hit.
[Graphical view]
SMARTiSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMiSSF54452. SSF54452. 1 hit.
PROSITEiPS50835. IG_LIKE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: PooledImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: PooledImported.
  3. "Sequencing and analysis of Bos taurus full-length insert cDNA clones."
    Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P., Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.
    Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: PooledImported.
  4. "Crystal structures of bovine CD1d reveal altered alphaGalCer presentation and a restricted A' pocket unable to bind long-chain glycolipids."
    Wang J., Guillaume J., Pauwels N., Van Calenbergh S., Van Rhijn I., Zajonc D.M.
    PLoS ONE 7:e47989-e47989(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 129-405, ACTIVE SITE, GLYCOSYLATION AT ASN-148 AND ASN-170.

Entry informationi

Entry nameiA1L565_BOVIN
AccessioniPrimary (citable) accession number: A1L565
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: April 1, 2015
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.