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A1L565

- A1L565_BOVIN

UniProt

A1L565 - A1L565_BOVIN

Protein
Submitted name:

CD1D antigen, d polypeptide

Gene

CD1D

Organism
Bos taurus (Bovine)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (06 Feb 2007)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. antigen processing and presentation Source: InterPro
    2. immune response Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    CD1D antigen, d polypeptideImported
    Gene namesi
    Name:CD1DImported
    OrganismiBos taurus (Bovine)Imported
    Taxonomic identifieri9913 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos

    Subcellular locationi

    GO - Cellular componenti

    1. membrane Source: InterPro

    PTM / Processingi

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi148 – 1481N-linked (GlcNAc...)Imported
    Glycosylationi170 – 1701N-linked (GlcNAc...)Imported

    Interactioni

    Protein-protein interaction databases

    STRINGi9913.ENSBTAP00000033859.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4F7CX-ray2.86A/C129-405[»]
    4F7EX-ray2.40A129-405[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG26626.
    HOGENOMiHOG000111666.
    HOVERGENiHBG004453.
    InParanoidiA1L565.

    Family and domain databases

    Gene3Di2.60.40.10. 1 hit.
    3.30.500.10. 1 hit.
    InterProiIPR007110. Ig-like_dom.
    IPR013783. Ig-like_fold.
    IPR003597. Ig_C1-set.
    IPR011161. MHC_I-like_Ag-recog.
    IPR011162. MHC_I/II-like_Ag-recog.
    [Graphical view]
    PfamiPF07654. C1-set. 1 hit.
    [Graphical view]
    SMARTiSM00407. IGc1. 1 hit.
    [Graphical view]
    SUPFAMiSSF54452. SSF54452. 1 hit.
    PROSITEiPS50835. IG_LIKE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    A1L565-1 [UniParc]FASTAAdd to Basket

    « Hide

    DSRSESRARK WGACCFCSSG GFRRFGGVLR MSGTGLRAER GSQARKGADV    50
    RGGRVETDAP RKARKLIHQP ENRLLPAFSC LIPGDGAQFR ASRHHPFFPN 100
    LTVSFFFFPF LLPSVLSLPF PRLLRSVFSP APQTPFSFQG LQISSFANRS 150
    WTRTDGLAWL GELQPYTWRN ESDTIRFLKP WSRGTFSDQQ WEQLQHTLLV 200
    YRSSFTRDIW EFVEKLHVEY PLEIQIATGC ELLPRNISES FLRAAFQGRD 250
    VLSFQGMSWV SAPDAPPFIQ EVIKVLNQNQ GTKETVHWLL HDIWPELVRG 300
    VLQTGKSELE KQVKPEAWLS SGPSPGPGRL LLVCHVSGFY PKPVRVMWMR 350
    GEQEEPGTRQ GDVMPNADST WYLRVTLDVA AGEVAGLSCQ VKHSSLGDQD 400
    IILYWNGNHV SRGLIVILVL LVFVLLFVGG LVFWFRKHRR YQDIP 445
    Length:445
    Mass (Da):50,542
    Last modified:February 6, 2007 - v1
    Checksum:iDB90CD1C70C18184
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BT029852 mRNA. Translation: ABM06107.1.
    UniGeneiBt.24559.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BT029852 mRNA. Translation: ABM06107.1 .
    UniGenei Bt.24559.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4F7C X-ray 2.86 A/C 129-405 [» ]
    4F7E X-ray 2.40 A 129-405 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 9913.ENSBTAP00000033859.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Phylogenomic databases

    eggNOGi NOG26626.
    HOGENOMi HOG000111666.
    HOVERGENi HBG004453.
    InParanoidi A1L565.

    Family and domain databases

    Gene3Di 2.60.40.10. 1 hit.
    3.30.500.10. 1 hit.
    InterProi IPR007110. Ig-like_dom.
    IPR013783. Ig-like_fold.
    IPR003597. Ig_C1-set.
    IPR011161. MHC_I-like_Ag-recog.
    IPR011162. MHC_I/II-like_Ag-recog.
    [Graphical view ]
    Pfami PF07654. C1-set. 1 hit.
    [Graphical view ]
    SMARTi SM00407. IGc1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54452. SSF54452. 1 hit.
    PROSITEi PS50835. IG_LIKE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: PooledImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: PooledImported.
    3. "Sequencing and analysis of Bos taurus full-length insert cDNA clones."
      Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P., Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.
      Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: PooledImported.
    4. "Crystal structures of bovine CD1d reveal altered ?GalCer presentation and a restricted A' pocket unable to bind long-chain glycolipids."
      Wang J., Guillaume J., Pauwels N., Van Calenbergh S., Van Rhijn I., Zajonc D.M.
      PLoS ONE 7:e47989-e47989(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 129-405, GLYCOSYLATION AT ASN-148 AND ASN-170.

    Entry informationi

    Entry nameiA1L565_BOVIN
    AccessioniPrimary (citable) accession number: A1L565
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 6, 2007
    Last sequence update: February 6, 2007
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported

    External Data

    Dasty 3