ID SL9A6_MOUSE Reviewed; 702 AA. AC A1L3P4; Q8BTG0; DT 22-FEB-2023, integrated into UniProtKB/Swiss-Prot. DT 06-FEB-2007, sequence version 1. DT 27-MAR-2024, entry version 128. DE RecName: Full=Sodium/hydrogen exchanger 6; DE AltName: Full=Na(+)/H(+) exchanger 6; DE Short=NHE-6; DE AltName: Full=Sodium/hydrogen exchanger; DE AltName: Full=Solute carrier family 9 member 6; GN Name=Slc9a6; Synonyms=Nhe6; OS Mus musculus (Mouse). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. OX NCBI_TaxID=10090; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RX PubMed=16141072; DOI=10.1126/science.1112014; RA Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., RA Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., RA Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J., RA Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., RA Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., RA Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., RA Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., RA Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., RA Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., RA Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., RA Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., RA Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., RA Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., RA Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., RA Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., RA Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., RA Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., RA Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., RA Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., RA Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., RA Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., RA Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., RA Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., RA Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., RA Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., RA van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., RA Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., RA Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., RA Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., RA Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., RA Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., RA Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., RA Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., RA Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.; RT "The transcriptional landscape of the mammalian genome."; RL Science 309:1559-1563(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=C57BL/6J; RX PubMed=19468303; DOI=10.1371/journal.pbio.1000112; RA Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., RA Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., RA Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S., RA Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., RA Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., RA Eichler E.E., Ponting C.P.; RT "Lineage-specific biology revealed by a finished genome assembly of the RT mouse."; RL PLoS Biol. 7:E1000112-E1000112(2009). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [4] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=19144319; DOI=10.1016/j.immuni.2008.11.006; RA Trost M., English L., Lemieux S., Courcelles M., Desjardins M., RA Thibault P.; RT "The phagosomal proteome in interferon-gamma-activated macrophages."; RL Immunity 30:143-154(2009). RN [5] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=21183079; DOI=10.1016/j.cell.2010.12.001; RA Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R., RA Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.; RT "A tissue-specific atlas of mouse protein phosphorylation and expression."; RL Cell 143:1174-1189(2010). RN [6] RP SUBCELLULAR LOCATION, FUNCTION, AND TRANSPORTER ACTIVITY. RX PubMed=17005858; DOI=10.1523/jneurosci.2990-06.2006; RA Hill J.K., Brett C.L., Chyou A., Kallay L.M., Sakaguchi M., Rao R., RA Gillespie P.G.; RT "Vestibular hair bundles control pH with (Na+, K+)/H+ exchangers NHE6 and RT NHE9."; RL J. Neurosci. 26:9944-9955(2006). RN [7] RP FUNCTION, AND TRANSPORTER ACTIVITY. RX PubMed=21413028; DOI=10.1002/jcp.22501; RA Liu L., Schlesinger P.H., Slack N.M., Friedman P.A., Blair H.C.; RT "High capacity Na+/H+ exchange activity in mineralizing osteoblasts."; RL J. Cell. Physiol. 226:1702-1712(2011). RN [8] RP DEVELOPMENTAL STAGE, AND SUBCELLULAR LOCATION. RX PubMed=23303939; DOI=10.1523/jneurosci.2583-12.2013; RA Deane E.C., Ilie A.E., Sizdahkhani S., Das Gupta M., Orlowski J., RA McKinney R.A.; RT "Enhanced recruitment of endosomal Na+/H+ exchanger NHE6 into dendritic RT spines of hippocampal pyramidal neurons during NMDA receptor-dependent RT long-term potentiation."; RL J. Neurosci. 33:595-610(2013). RN [9] RP SUBCELLULAR LOCATION, DISRUPTION PHENOTYPE, AND FUNCTION. RX PubMed=24035762; DOI=10.1016/j.neuron.2013.07.043; RA Ouyang Q., Lizarraga S.B., Schmidt M., Yang U., Gong J., Ellisor D., RA Kauer J.A., Morrow E.M.; RT "Christianson syndrome protein NHE6 modulates TrkB endosomal signaling RT required for neuronal circuit development."; RL Neuron 80:97-112(2013). RN [10] RP MUTAGENESIS OF ALA-11. RX PubMed=31676550; DOI=10.1523/eneuro.0046-19.2019; RA Ouyang Q., Joesch-Cohen L., Mishra S., Riaz H.A., Schmidt M., Morrow E.M.; RT "Functional Assessment In Vivo of the Mouse Homolog of the Human Ala-9-Ser RT NHE6 Variant."; RL ENeuro 6:0-0(2019). RN [11] RP FUNCTION, AND SUBCELLULAR LOCATION. RX PubMed=34526390; DOI=10.1523/jneurosci.1244-20.2021; RA Pescosolido M.F., Ouyang Q., Liu J.S., Morrow E.M.; RT "Loss of Christianson Syndrome Na+/H+ Exchanger 6 (NHE6) Causes Abnormal RT Endosome Maturation and Trafficking Underlying Lysosome Dysfunction in RT Neurons."; RL J. Neurosci. 41:9235-9256(2021). CC -!- FUNCTION: Endosomal Na(+), K(+)/H(+) antiporter. Mediates the CC electroneutral exchange of endosomal luminal H(+) for a cytosolic Na(+) CC or K(+). By facilitating proton efflux, SLC9A6 counteracts the acidity CC generated by vacuolar (V)-ATPase, thereby limiting luminal CC acidification. Responsible for alkalizing and maintaining the endosomal CC pH, and consequently in, e.g., endosome maturation and trafficking of CC recycling endosomal cargo (PubMed:17005858, PubMed:21413028, CC PubMed:24035762, PubMed:34526390). Plays a critical role during CC neurodevelopment by regulating synaptic development and plasticity CC (PubMed:21413028, PubMed:34526390). Implicated in the maintenance of CC cell polarity in a manner that is dependent on its ability to modulate CC intravesicular pH (By similarity). Regulates intracelular pH in some CC specialized cells, osteoclasts and stereocilia where this transporter CC localizes to the plasma membrane (PubMed:17005858, PubMed:21413028). CC {ECO:0000250|UniProtKB:Q92581, ECO:0000269|PubMed:17005858, CC ECO:0000269|PubMed:21413028, ECO:0000269|PubMed:24035762, CC ECO:0000269|PubMed:34526390}. CC -!- CATALYTIC ACTIVITY: CC Reaction=H(+)(out) + Na(+)(in) = H(+)(in) + Na(+)(out); CC Xref=Rhea:RHEA:29419, ChEBI:CHEBI:15378, ChEBI:CHEBI:29101; CC Evidence={ECO:0000305|PubMed:21413028}; CC -!- CATALYTIC ACTIVITY: CC Reaction=H(+)(out) + K(+)(in) = H(+)(in) + K(+)(out); CC Xref=Rhea:RHEA:29467, ChEBI:CHEBI:15378, ChEBI:CHEBI:29103; CC Evidence={ECO:0000269|PubMed:17005858}; CC -!- SUBUNIT: Homodimer. Interacts with RACK1; regulates the distribution of CC SLC9A6 between endosomes and the plasma membrane. CC {ECO:0000250|UniProtKB:Q92581}. CC -!- SUBCELLULAR LOCATION: Endosome membrane {ECO:0000250|UniProtKB:Q92581}; CC Multi-pass membrane protein {ECO:0000255}. Recycling endosome membrane CC {ECO:0000269|PubMed:23303939, ECO:0000269|PubMed:24035762}; Multi-pass CC membrane protein {ECO:0000255}. Early endosome membrane CC {ECO:0000269|PubMed:23303939, ECO:0000269|PubMed:24035762}; Multi-pass CC membrane protein {ECO:0000255}. Late endosome membrane CC {ECO:0000269|PubMed:24035762}; Multi-pass membrane protein CC {ECO:0000255}. Cell membrane {ECO:0000269|PubMed:17005858}; Multi-pass CC membrane protein {ECO:0000255}. Note=Present predominantly in the CC recycling compartments including early and recycling endosomes, but CC undergoes plasma membrane localization during vesicular recycling, CC which is enhanced upon certain stimuli, such as hypoxia. CC {ECO:0000250|UniProtKB:Q92581}. CC -!- DEVELOPMENTAL STAGE: Developmentally regulated in area CA1 of the CC hippocamus, peaking at around postnatal day 50 and declining CC thereafter. {ECO:0000269|PubMed:23303939}. CC -!- PTM: Ubiquitinated (in vitro). {ECO:0000250|UniProtKB:Q92581}. CC -!- PTM: Glycosylated. {ECO:0000250|UniProtKB:Q92581}. CC -!- DISRUPTION PHENOTYPE: The SLC9A6 null mice show a 10-20% increased CC mortality after birth, yet the surviving mice do not display any CC obvious difference. Behavioral tests reveal a modest motor CC hyperactivity associated with coordination deficits and limited ataxia. CC Neurons from these deficient mice exhibit endosomal hyperacidification, CC as well as impoverished neuronal arborization and attendant circuit CC dysfunction. {ECO:0000269|PubMed:24035762}. CC -!- SIMILARITY: Belongs to the monovalent cation:proton antiporter 1 (CPA1) CC transporter (TC 2.A.36) family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AK032326; BAC27816.1; -; mRNA. DR EMBL; AC124584; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AL672085; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; BC130221; AAI30222.1; -; mRNA. DR CCDS; CCDS40979.1; -. DR RefSeq; NP_766368.2; NM_172780.3. DR AlphaFoldDB; A1L3P4; -. DR SMR; A1L3P4; -. DR STRING; 10090.ENSMUSP00000076922; -. DR iPTMnet; A1L3P4; -. DR PhosphoSitePlus; A1L3P4; -. DR SwissPalm; A1L3P4; -. DR MaxQB; A1L3P4; -. DR PaxDb; 10090-ENSMUSP00000076922; -. DR PeptideAtlas; A1L3P4; -. DR PRIDE; A1L3P4; -. DR ProteomicsDB; 333294; -. DR Antibodypedia; 30408; 190 antibodies from 26 providers. DR DNASU; 236794; -. DR Ensembl; ENSMUST00000077741.12; ENSMUSP00000076922.6; ENSMUSG00000060681.16. DR GeneID; 236794; -. DR KEGG; mmu:236794; -. DR UCSC; uc009tgk.2; mouse. DR AGR; MGI:2443511; -. DR CTD; 10479; -. DR MGI; MGI:2443511; Slc9a6. DR VEuPathDB; HostDB:ENSMUSG00000060681; -. DR eggNOG; KOG1965; Eukaryota. DR GeneTree; ENSGT00940000153460; -. DR InParanoid; A1L3P4; -. DR OMA; LPNCCGP; -. DR OrthoDB; 1065060at2759; -. DR TreeFam; TF318755; -. DR Reactome; R-MMU-425986; Sodium/Proton exchangers. DR BioGRID-ORCS; 236794; 0 hits in 78 CRISPR screens. DR Proteomes; UP000000589; Chromosome X. DR RNAct; A1L3P4; Protein. DR Bgee; ENSMUSG00000060681; Expressed in superior cervical ganglion and 218 other cell types or tissues. DR ExpressionAtlas; A1L3P4; baseline and differential. DR GO; GO:0043679; C:axon terminus; IDA:MGI. DR GO; GO:0044308; C:axonal spine; IDA:MGI. DR GO; GO:0031410; C:cytoplasmic vesicle; IDA:MGI. DR GO; GO:0030425; C:dendrite; IDA:MGI. DR GO; GO:0005769; C:early endosome; IDA:MGI. DR GO; GO:0031901; C:early endosome membrane; ISO:MGI. DR GO; GO:0005789; C:endoplasmic reticulum membrane; ISO:MGI. DR GO; GO:0005768; C:endosome; IDA:MGI. DR GO; GO:0098978; C:glutamatergic synapse; IDA:SynGO. DR GO; GO:0043231; C:intracellular membrane-bounded organelle; ISO:MGI. DR GO; GO:0005770; C:late endosome; IDA:MGI. DR GO; GO:0031902; C:late endosome membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005739; C:mitochondrion; HDA:MGI. DR GO; GO:0005886; C:plasma membrane; IDA:UniProtKB. DR GO; GO:0055037; C:recycling endosome; IDA:MGI. DR GO; GO:0055038; C:recycling endosome membrane; ISO:MGI. DR GO; GO:0098685; C:Schaffer collateral - CA1 synapse; IDA:SynGO. DR GO; GO:0045202; C:synapse; IDA:MGI. DR GO; GO:0042802; F:identical protein binding; ISO:MGI. DR GO; GO:0015386; F:potassium:proton antiporter activity; IDA:UniProtKB. DR GO; GO:0015385; F:sodium:proton antiporter activity; IDA:UniProtKB. DR GO; GO:0048675; P:axon extension; ISO:MGI. DR GO; GO:0031547; P:brain-derived neurotrophic factor receptor signaling pathway; IMP:MGI. DR GO; GO:0097484; P:dendrite extension; ISO:MGI. DR GO; GO:0060996; P:dendritic spine development; IMP:MGI. DR GO; GO:0030010; P:establishment of cell polarity; ISS:UniProtKB. DR GO; GO:0048812; P:neuron projection morphogenesis; ISO:MGI. DR GO; GO:0071805; P:potassium ion transmembrane transport; IBA:GO_Central. DR GO; GO:1902600; P:proton transmembrane transport; IMP:MGI. DR GO; GO:0051453; P:regulation of intracellular pH; IDA:UniProtKB. DR GO; GO:0051386; P:regulation of neurotrophin TRK receptor signaling pathway; IMP:MGI. DR GO; GO:0099072; P:regulation of postsynaptic membrane neurotransmitter receptor levels; IDA:SynGO. DR GO; GO:0098719; P:sodium ion import across plasma membrane; IBA:GO_Central. DR GO; GO:0050808; P:synapse organization; IMP:MGI. DR Gene3D; 6.10.140.1330; -; 1. DR InterPro; IPR006153; Cation/H_exchanger. DR InterPro; IPR018422; Cation/H_exchanger_CPA1. DR InterPro; IPR004709; NaH_exchanger. DR InterPro; IPR002090; NHE-6/7/9. DR NCBIfam; TIGR00840; b_cpa1; 1. DR PANTHER; PTHR10110; SODIUM/HYDROGEN EXCHANGER; 1. DR PANTHER; PTHR10110:SF94; SODIUM_HYDROGEN EXCHANGER 6; 1. DR Pfam; PF00999; Na_H_Exchanger; 1. DR PRINTS; PR01084; NAHEXCHNGR. DR PRINTS; PR01088; NAHEXCHNGR6. PE 1: Evidence at protein level; KW Cell membrane; Endosome; Ion transport; Membrane; Reference proteome; KW Sodium; Sodium transport; Transmembrane; Transmembrane helix; Transport; KW Ubl conjugation. FT CHAIN 1..702 FT /note="Sodium/hydrogen exchanger 6" FT /id="PRO_0000457379" FT TRANSMEM 72..92 FT /note="Helical; Name=1" FT /evidence="ECO:0000255" FT TRANSMEM 104..124 FT /note="Helical; Name=2" FT /evidence="ECO:0000255" FT TRANSMEM 177..197 FT /note="Helical; Name=3" FT /evidence="ECO:0000255" FT TRANSMEM 212..232 FT /note="Helical; Name=4" FT /evidence="ECO:0000255" FT TRANSMEM 253..273 FT /note="Helical; Name=5" FT /evidence="ECO:0000255" FT TRANSMEM 279..299 FT /note="Helical; Name=6" FT /evidence="ECO:0000255" FT TRANSMEM 325..345 FT /note="Helical; Name=7" FT /evidence="ECO:0000255" FT TRANSMEM 373..393 FT /note="Helical; Name=8" FT /evidence="ECO:0000255" FT TRANSMEM 415..435 FT /note="Helical; Name=9" FT /evidence="ECO:0000255" FT TRANSMEM 437..457 FT /note="Helical; Name=10" FT /evidence="ECO:0000255" FT TRANSMEM 480..500 FT /note="Helical; Name=11" FT /evidence="ECO:0000255" FT TRANSMEM 516..536 FT /note="Helical; Name=12" FT /evidence="ECO:0000255" FT MUTAGEN 11 FT /note="A->S: Mice have normal brain size at 6 months of age FT and do not show cerebellar degeneration or defective FT neuronal arborization. Neurons from male mice also do not FT demonstrate an abnormality in intraendosomal pH compared FT with controls." FT /evidence="ECO:0000269|PubMed:31676550" FT CONFLICT 695 FT /note="D -> G (in Ref. 1; BAC27816)" FT /evidence="ECO:0000305" SQ SEQUENCE 702 AA; 77953 MW; 243F0126533B5547 CRC64; MAGARRGWRL APVRRGVCGP RARPLMRPLW LLFAVSFFGW TGALDGSGGT TRAMDEEIVS EKQAEESHRQ DSANLLIFIL LLTLTILTIW LFKHRRARFL HETGLAMIYG LLVGLVLRYG IHVPSDVNNV TLSCEVQSSP TTLLVNVSGK FYEYTLKGEI SSHELNNVQD NEMLRKVTFD PEVFFNILLP PIIFYAGYSL KRRHFFRNLG SILAYAFLGT AISCFVIGSI MYGCVTLMKV TGQLAGDFYF TDCLLFGAIV SATDPVTVLA IFHELQVDVE LYALLFGESV LNDAVAIVLS SSIVAYQPAG DNSHTFDVTA MFKSIGIFLG IFSGSFAMGA ATGVVTALVT KFTKLREFQL LETGLFFLMS WSTFLLAEAW GFTGVVAVLF CGITQAHYTY NNLSTESQHR TKQLFELLNF LAENFIFSYM GLTLFTFQNH VFNPTFVVGA FIAIFLGRAA NIYPLSLLLN LGRRSKIGSN FQHMMMFAGL RGAMAFALAI RDTATYARQM MFSTTLLIVF FTVWVFGGGT TAMLSCLHIR VGVDSDQEHL GVPDNERRTT KAESAWLFRM WYNFDHNYLK PLLTHSGPPL TTTLPACCGP IARCLTSPQA YENQEQLKDD DSDLILNDGD ISLTYGDSTV NTESATASAP RRFMGNSSED ALDRELTFGD HELVIRGTRL VLPMDDSEPA LNSLDDTRHS PA //