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Protein
Submitted name:

Ldlrap1b protein

Gene

ldlrap1b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Keywords - Molecular functioni

ReceptorImported

Names & Taxonomyi

Protein namesi
Submitted name:
Ldlrap1b proteinImported
Submitted name:
Low density lipoprotein receptor adaptor protein 1bImported
Gene namesi
Name:ldlrap1bImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-070112-1012. ldlrap1b.

PTM / Processingi

Keywords - PTMi

LipoproteinImported

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000058092.

Structurei

3D structure databases

ProteinModelPortaliA1L2A8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini44 – 178135PIDInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG3536. Eukaryota.
ENOG410ZHJT. LUCA.
HOGENOMiHOG000030906.
HOVERGENiHBG058060.
KOiK12474.
PhylomeDBiA1L2A8.

Family and domain databases

Gene3Di2.30.29.30. 1 hit.
InterProiIPR011993. PH_dom-like.
IPR006020. PTB/PI_dom.
[Graphical view]
PfamiPF14719. PID_2. 1 hit.
[Graphical view]
SMARTiSM00462. PTB. 1 hit.
[Graphical view]
SUPFAMiSSF50729. SSF50729. 1 hit.
PROSITEiPS01179. PID. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1L2A8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDALKSAGRA IIRSPSLAKQ SWISGKHKKL PENWTDTRET LLEGMVFQLK
60 70 80 90 100
YLGMTLVEEP KGEELSAAAV KRIVATAKAG GKKLQKVTLK VSPRGIILYD
110 120 130 140 150
SASNQLIENV SIYRISYCTA DKMHDKVFAY IAQSQRNETL ECHAYLCTKR
160 170 180 190 200
KVAQAVTLTV AQAFRVAFEF WQTAKEEKEK QVKCGSDGEA ASSSQSESSA
210 220 230 240 250
SLSSMKGEVA TGDLLDLECG VKDRSGKDAA HPVQNHSTEN NNTVWELEDG
260 270 280 290 300
LDEAFSRLAE SCTNPQVLDI GVNPQDYNPE DCLSPTHWDK ADSEAADAED

AFGF
Length:304
Mass (Da):33,359
Last modified:February 6, 2007 - v1
Checksum:iA694270BCE710113
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC129425 mRNA. Translation: AAI29426.1.
BC164254 mRNA. Translation: AAI64254.1.
RefSeqiNP_001074104.1. NM_001080635.1.
UniGeneiDr.92830.

Genome annotation databases

GeneIDi791153.
KEGGidre:791153.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC129425 mRNA. Translation: AAI29426.1.
BC164254 mRNA. Translation: AAI64254.1.
RefSeqiNP_001074104.1. NM_001080635.1.
UniGeneiDr.92830.

3D structure databases

ProteinModelPortaliA1L2A8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000058092.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi791153.
KEGGidre:791153.

Organism-specific databases

CTDi791153.
ZFINiZDB-GENE-070112-1012. ldlrap1b.

Phylogenomic databases

eggNOGiKOG3536. Eukaryota.
ENOG410ZHJT. LUCA.
HOGENOMiHOG000030906.
HOVERGENiHBG058060.
KOiK12474.
PhylomeDBiA1L2A8.

Family and domain databases

Gene3Di2.30.29.30. 1 hit.
InterProiIPR011993. PH_dom-like.
IPR006020. PTB/PI_dom.
[Graphical view]
PfamiPF14719. PID_2. 1 hit.
[Graphical view]
SMARTiSM00462. PTB. 1 hit.
[Graphical view]
SUPFAMiSSF50729. SSF50729. 1 hit.
PROSITEiPS01179. PID. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: EmbryoImported.
  2. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PCR rescueImported.

Entry informationi

Entry nameiA1L2A8_DANRE
AccessioniPrimary (citable) accession number: A1L2A8
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: June 8, 2016
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.