Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

A1L1R6

- ZN423_DANRE

UniProt

A1L1R6 - ZN423_DANRE

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Zinc finger protein 423

Gene

znf423

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

Transcription factor that can both act as an activator or a repressor depending on the context. Plays a central role in BMP signaling and olfactory neurogenesis. Associates with SMADs in response to bmp2 leading to activate transcription of BMP target genes. Acts as a transcriptional repressor involved in terminal olfactory receptor neurons differentiation. Involved in olfactory neurogenesis by participating in a developmental switch that regulates the transition from differentiation to maturation in olfactory receptor neurons (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri76 – 9823C2H2-type 1PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri150 – 17223C2H2-type 2PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri178 – 20023C2H2-type 3PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri206 – 22823C2H2-type 4PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri234 – 25623C2H2-type 5PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri286 – 30924C2H2-type 6PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri318 – 34124C2H2-type 7PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri346 – 36823C2H2-type 8PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri437 – 46125C2H2-type 9; degeneratePROSITE-ProRule annotationAdd
BLAST
Zinc fingeri469 – 49224C2H2-type 10PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri513 – 53624C2H2-type 11PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri555 – 57824C2H2-type 12PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri603 – 62826C2H2-type 13; atypicalPROSITE-ProRule annotationAdd
BLAST
Zinc fingeri675 – 69723C2H2-type 14PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri705 – 72824C2H2-type 15PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri736 – 75924C2H2-type 16PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri764 – 78724C2H2-type 17PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri794 – 81724C2H2-type 18PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri831 – 85323C2H2-type 19PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri857 – 88024C2H2-type 20PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri954 – 97623C2H2-type 21; degeneratePROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1000 – 102223C2H2-type 22PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1029 – 105123C2H2-type 23PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1090 – 111223C2H2-type 24PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1201 – 122424C2H2-type 25PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1249 – 127123C2H2-type 26PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1279 – 130123C2H2-type 27PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1310 – 133324C2H2-type 28PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1340 – 136324C2H2-type 29PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. cell differentiation Source: UniProtKB-KW
  2. nervous system development Source: UniProtKB-KW
  3. regulation of transcription, DNA-templated Source: UniProtKB-KW
  4. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator, Developmental protein, Repressor

Keywords - Biological processi

Differentiation, Neurogenesis, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein 423
Gene namesi
Name:znf423
ORF Names:si:ch211-216l23.1, zgc:158272
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437: Chromosome 18

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. nucleus Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13651365Zinc finger protein 423PRO_0000308598Add
BLAST

Expressioni

Gene expression databases

BgeeiA1L1R6.

Structurei

3D structure databases

ProteinModelPortaliA1L1R6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 29 C2H2-type zinc fingers.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri76 – 9823C2H2-type 1PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri150 – 17223C2H2-type 2PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri178 – 20023C2H2-type 3PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri206 – 22823C2H2-type 4PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri234 – 25623C2H2-type 5PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri286 – 30924C2H2-type 6PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri318 – 34124C2H2-type 7PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri346 – 36823C2H2-type 8PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri437 – 46125C2H2-type 9; degeneratePROSITE-ProRule annotationAdd
BLAST
Zinc fingeri469 – 49224C2H2-type 10PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri513 – 53624C2H2-type 11PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri555 – 57824C2H2-type 12PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri603 – 62826C2H2-type 13; atypicalPROSITE-ProRule annotationAdd
BLAST
Zinc fingeri675 – 69723C2H2-type 14PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri705 – 72824C2H2-type 15PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri736 – 75924C2H2-type 16PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri764 – 78724C2H2-type 17PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri794 – 81724C2H2-type 18PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri831 – 85323C2H2-type 19PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri857 – 88024C2H2-type 20PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri954 – 97623C2H2-type 21; degeneratePROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1000 – 102223C2H2-type 22PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1029 – 105123C2H2-type 23PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1090 – 111223C2H2-type 24PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1201 – 122424C2H2-type 25PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1249 – 127123C2H2-type 26PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1279 – 130123C2H2-type 27PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1310 – 133324C2H2-type 28PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1340 – 136324C2H2-type 29PROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiCOG5048.
GeneTreeiENSGT00760000118980.
HOGENOMiHOG000155793.
HOVERGENiHBG052773.
InParanoidiA1L1R6.
OMAiFIEHCQM.
OrthoDBiEOG7NGQB0.
PhylomeDBiA1L1R6.
TreeFamiTF331504.

Family and domain databases

Gene3Di3.30.160.60. 4 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 3 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 30 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 27 hits.
PS50157. ZINC_FINGER_C2H2_2. 23 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1L1R6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSRRKQAKPR SVKAVEEAES TECASGWDSS VQTDAAVSER DSDRKESRAV
60 70 80 90 100
GEDGEQSVTS HDERVGEEDL DDDSIFTCDN CQQDFECLAD LTEHRTNHCP
110 120 130 140 150
ADGDDDPGLS WVASSPSSKD VASPSQMLGD GCCDMGMGTG EEEGGSGLPY
160 170 180 190 200
PCQFCDKSFS RLSYLKRHEQ IHSDKLPFKC TFCSRLFKHK RSRDRHVKLH
210 220 230 240 250
TGDKKYSCQE CEAAFSRSDH LKIHLKTHSS SKPFKCSICK RGFSSTSSLQ
260 270 280 290 300
SHMQAHRKNK EHLAKKDQGK RDGSSSDVTE QDQDLYMCDY CEETFSQTDE
310 320 330 340 350
LEKHVLTQHP QLSDRAELQC IHCPEIFSDE GTLLTHIDRT HANKKHKCPM
360 370 380 390 400
CAEQFPSVED VYCHLDSHRQ PDSSNHSASP DPVLGSVASM SSATPDSSAS
410 420 430 440 450
LERGSTPDST LKPGQSRRKL APSSDHDDGT WSGKVTYSCP YCSKRDFNSL
460 470 480 490 500
AVLEIHLKTI HADKPQQSHT CQLCLETLPT LYNLNEHVRK AHRSSGNSAS
510 520 530 540 550
NFPLLQFSNV SAFHCNYCPD MFADINSLQE HIRVSHCLSG GVVAGSTTLE
560 570 580 590 600
GNHAFFCNQC SMGFLTESSL TEHIQQTHCS SVGGVTKMES PVLQPSQSFM
610 620 630 640 650
EVYSCPYCTN SPIFGSLLKL TKHIKENHKN IPLANNKRKV KVADLSPASS
660 670 680 690 700
DVEISSPKRH RVTGDSTPAV ANGDYPCNQC DLRFSSFEGF QAHLKSHLEL
710 720 730 740 750
LLRRQSCPQC NKEDFDSQEA LLQHLTIHYT TTSTQYVCES CDKQFSSVDD
760 770 780 790 800
LQKHLLDMHT FVLYHCTLCQ EVFDSKVSIQ VHLAVKHSNE KKMYRCTACA
810 820 830 840 850
WDFRKESDLQ LHVKHSHLGH PASTGAPGKA RKCIFCGETF GTEVELQCHI
860 870 880 890 900
TTHSKKYNCR LCGKAFHAIV LLERHLREKH CIFDGGNGNG NGGSQNGTPN
910 920 930 940 950
GVTQSSKRST AGSTAAAEQA DLQNMLLKGG SQETANSHEA SGGEEELDAS
960 970 980 990 1000
EPMYACDICG AAYTMESLLQ NHRLRDHNIR PGEDDAGSRK KKADFIKGNH
1010 1020 1030 1040 1050
KCNVCSRTFF SENGLREHAQ THRGPAKHYM CPICGERFPS LLTLTEHKVT
1060 1070 1080 1090 1100
HSKSLDTGTC RICKMPLQSE EEFIEHCQMH PDLRNSLTGF RCVVCMQTVT
1110 1120 1130 1140 1150
STLELKIHGT FHMQKLSSSG GSGGGGGSAS SSPNGQLQAH KLYKCALCLK
1160 1170 1180 1190 1200
DFKNKQELVK IDVNGLPYGL CAGCMSRGTN GQSPTVVVTP QEAGDKGTTG
1210 1220 1230 1240 1250
LRCSECAVKF ETLEDLESHI QVDHTEMSPE TSGAKKVTDA SPVPKKKTYQ
1260 1270 1280 1290 1300
CIKCQMTFET EREIQIHVAN HMIEEGINHE CKLCNQMFDS PAKLLCHLIE
1310 1320 1330 1340 1350
HSFEGMGGTF KCPVCFTVFV QANKLQQHIF AVHGQEDKIY DCSQCPQKFF
1360
FQTELQNHTL SQHAQ
Length:1,365
Mass (Da):151,465
Last modified:February 6, 2007 - v1
Checksum:i5B53BE488AE40D49
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX470162 Genomic DNA. Translation: CAK04518.1.
CR387935 Genomic DNA. Translation: CAK04486.1.
BC129184 mRNA. Translation: AAI29185.1.
RefSeqiNP_001073499.1. NM_001080030.1.
UniGeneiDr.161769.

Genome annotation databases

EnsembliENSDART00000083296; ENSDARP00000077731; ENSDARG00000059707.
GeneIDi566696.
KEGGidre:566696.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX470162 Genomic DNA. Translation: CAK04518.1 .
CR387935 Genomic DNA. Translation: CAK04486.1 .
BC129184 mRNA. Translation: AAI29185.1 .
RefSeqi NP_001073499.1. NM_001080030.1.
UniGenei Dr.161769.

3D structure databases

ProteinModelPortali A1L1R6.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSDART00000083296 ; ENSDARP00000077731 ; ENSDARG00000059707 .
GeneIDi 566696.
KEGGi dre:566696.

Phylogenomic databases

eggNOGi COG5048.
GeneTreei ENSGT00760000118980.
HOGENOMi HOG000155793.
HOVERGENi HBG052773.
InParanoidi A1L1R6.
OMAi FIEHCQM.
OrthoDBi EOG7NGQB0.
PhylomeDBi A1L1R6.
TreeFami TF331504.

Miscellaneous databases

NextBioi 20888324.
PROi A1L1R6.

Gene expression databases

Bgeei A1L1R6.

Family and domain databases

Gene3Di 3.30.160.60. 4 hits.
InterProi IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view ]
Pfami PF00096. zf-C2H2. 3 hits.
[Graphical view ]
SMARTi SM00355. ZnF_C2H2. 30 hits.
[Graphical view ]
PROSITEi PS00028. ZINC_FINGER_C2H2_1. 27 hits.
PS50157. ZINC_FINGER_C2H2_2. 23 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Tuebingen.
  2. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Embryo.

Entry informationi

Entry nameiZN423_DANRE
AccessioniPrimary (citable) accession number: A1L1R6
Secondary accession number(s): Q1L943, Q1LX66
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: February 6, 2007
Last modified: October 29, 2014
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3