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A1KQY6 (A1KQY6_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Protein St8sia4 Ensembl ENSRNOP00000026010

RCG55449 EMBL EDL91890.1
Gene names
Name:St8sia4 Ensembl ENSRNOP00000026010 RGD 621845
Synonyms:LOC501189 Ensembl ENSRNOP00000026010 RGD 1590766, Siat 8D EMBL CAL91579.1
ORF Names:rCG_55449 EMBL EDL91890.1
OrganismRattus norvegicus (Rat) [Reference proteome] EMBL CAL91579.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length454 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
A1KQY6 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: 4644DA8D857E7D36

FASTA45451,762
        10         20         30         40         50         60 
MHKVSHLKRN PSPREAAQSD PSPASANCAA GRWAALENRE SSTAERPSDL ILGSRLHAPF 

        70         80         90        100        110        120 
ANFRFLPLDY FPKTEPLYQE KVPELGQPGL SRAPKMRSIR KRWTICTISL LLIFYKTKEI 

       130        140        150        160        170        180 
ARTEEHQETQ LIGDGELCLS RSLVNNSDKI TRKAGSTIFQ HSVQGWKINS SLVLEIRKNI 

       190        200        210        220        230        240 
LRFLDAERDV SVVKSSFKPG DVIHYVLDRR RTLNISHDLH SLLPEVSPMK NRRFKTCAVV 

       250        260        270        280        290        300 
GNSGILLDSG CGKEIDSHNF VIRCNLAPVV EFAADVGTKS DFITMNPSVV QRAFGGFRNE 

       310        320        330        340        350        360 
SDREKFVHRL SMLNDSVLWI PAFMVKGGEK HVEWVNALIL KNKLKVRTAY PSLRLIHAVR 

       370        380        390        400        410        420 
GYWLTNKVPI KRPSTGLLMY TLATRFCDEI HLYGFWPFPK DLNGKAVKYH YYDDLKYRYF 

       430        440        450 
SNASPHRMPL EFKTLNVLHN RGALKLTTGK CMKQ 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000026010.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL91890.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL91890.1.
[4]"Evolutionary history of the alpha2,8-sialyltransferase (ST8Sia) gene family: tandem duplications in early deuterostomes explain most of the diversity found in the vertebrate ST8Sia genes."
Harduin-Lepers A., Petit D., Mollicone R., Delannoy P., Petit J.M., Oriol R.
BMC Evol. Biol. 8:258-258(2008)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Wistar EMBL CAL91579.1.
[5]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000026010.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06061704 Genomic DNA. No translation available.
AABR06061705 Genomic DNA. No translation available.
AM419015 mRNA. Translation: CAL91579.1.
CH473997 Genomic DNA. Translation: EDL91890.1.
RefSeqNP_446366.1. NM_053914.1.
UniGeneRn.234502.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000026010.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000026010; ENSRNOP00000026010; ENSRNOG00000019128.
GeneID116696.
KEGGrno:116696.

Organism-specific databases

CTD7903.
RGD1590766. LOC501189.
621845. St8sia4.

Phylogenomic databases

eggNOGNOG324948.
GeneTreeENSGT00550000074407.
HOVERGENHBG056466.
KOK06614.
OMASVRKRWT.
OrthoDBEOG7VQJD1.
PhylomeDBA1KQY6.

Gene expression databases

GenevestigatorA1KQY6.

Family and domain databases

InterProIPR001675. Glyco_trans_29.
[Graphical view]
PfamPF00777. Glyco_transf_29. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio34016519.
PROA1KQY6.

Entry information

Entry nameA1KQY6_RAT
AccessionPrimary (citable) accession number: A1KQY6
Secondary accession number(s): F1MA57
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: July 9, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)