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Protein
Submitted name:

Oligogalacturonate lyase

Gene

ogl

Organism
Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi270 – 2701CalciumCombined sources
Metal bindingi272 – 2721CalciumCombined sources
Metal bindingi287 – 2871Manganese; via tele nitrogenCombined sources
Metal bindingi350 – 3501ManganeseCombined sources
Metal bindingi353 – 3531Manganese; via pros nitrogenCombined sources
Metal bindingi355 – 3551Manganese; via tele nitrogenCombined sources

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Keywords - Ligandi

CalciumCombined sources, ManganeseCombined sources, Metal-bindingCombined sources

Enzyme and pathway databases

BRENDAi4.2.2.6. 6741.

Protein family/group databases

CAZyiPL22. Polysaccharide Lyase Family 22.

Names & Taxonomyi

Protein namesi
Submitted name:
Oligogalacturonate lyaseImported
Gene namesi
Name:oglImported
Ordered Locus Names:YE1876Imported
OrganismiYersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)Imported
Taxonomic identifieri393305 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
Proteomesi
  • UP000000642 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi393305.YE1876.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3PE7X-ray1.65A1-388[»]
ProteinModelPortaliA1JMA5.
SMRiA1JMA5. Positions 2-385.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiA1JMA5.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 386386Pectate_lyase22InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4105CAZ. Bacteria.
COG0823. LUCA.
HOGENOMiHOG000219311.
KOiK01730.
OMAiHLMSNFD.
OrthoDBiPOG091H0XA8.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR027946. Ogl_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
[Graphical view]
PfamiPF14583. Pectate_lyase22. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1JMA5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKGKQIPLT FDTYQDASTG AQVTRLTPPD VTCHRNYFYQ KCFTRDGSKL
60 70 80 90 100
LFGGAFDGPW NYYLLDLNTQ VATQLTEGRG DNTFGGFLSP DDDALFYVKD
110 120 130 140 150
GRNLMRVDLA TLEENVVYQV PAEWVGYGTW VANSDCTKLV GIEIRREDWV
160 170 180 190 200
PLTDWKKFHE FYFTKPCCRL MRVDLKTGES TVILQENQWL GHPIYRPYDD
210 220 230 240 250
STVAFCHEGP HDLVDARMWL INEDGTNMRK VKTHAEGESC THEFWVPDGS
260 270 280 290 300
ALVYVSYLKG SPDRFIYSAD PETLENRQLT SMPACSHLMS NYDGSLMVGD
310 320 330 340 350
GSDAPVDVQD DSGYKIENDP FLYVFNMKNG TQHRVARHDT SWKVFEGDRQ
360 370 380
VTHPHPSFTP DDKQILFTSD VHGKPALYLA TLPESVWK
Length:388
Mass (Da):44,211
Last modified:February 6, 2007 - v1
Checksum:i11FF6CA0EE60922D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM286415 Genomic DNA. Translation: CAL11955.1.
RefSeqiWP_011816209.1. NC_008800.1.
YP_001006137.1. NC_008800.1.

Genome annotation databases

EnsemblBacteriaiCAL11955; CAL11955; YE1876.
GeneIDi4715988.
KEGGiyen:YE1876.
PATRICi18563330. VBIYerEnt11519_2029.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM286415 Genomic DNA. Translation: CAL11955.1.
RefSeqiWP_011816209.1. NC_008800.1.
YP_001006137.1. NC_008800.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3PE7X-ray1.65A1-388[»]
ProteinModelPortaliA1JMA5.
SMRiA1JMA5. Positions 2-385.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi393305.YE1876.

Protein family/group databases

CAZyiPL22. Polysaccharide Lyase Family 22.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAL11955; CAL11955; YE1876.
GeneIDi4715988.
KEGGiyen:YE1876.
PATRICi18563330. VBIYerEnt11519_2029.

Phylogenomic databases

eggNOGiENOG4105CAZ. Bacteria.
COG0823. LUCA.
HOGENOMiHOG000219311.
KOiK01730.
OMAiHLMSNFD.
OrthoDBiPOG091H0XA8.

Enzyme and pathway databases

BRENDAi4.2.2.6. 6741.

Miscellaneous databases

EvolutionaryTraceiA1JMA5.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR027946. Ogl_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
[Graphical view]
PfamiPF14583. Pectate_lyase22. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiA1JMA5_YERE8
AccessioniPrimary (citable) accession number: A1JMA5
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: September 7, 2016
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.