A1F5E0 (A1F5E0_VIBCL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcription-repair coupling factor EMBL EAX58532.1

Gene names

Name:	mfd EMBL EAX58532.1
ORF Names:	VC274080_1928 EMBL EAX58532.1

Organism

Vibrio cholerae 2740-80 EMBL EAX58532.1

Taxonomic identifier

412614 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio › Vibrio cholerae

Protein attributes

Sequence length	1155 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Ontologies

Keywords
Ligand	ATP-binding Nucleotide-binding
Molecular function	Helicase RuleBase RU000452 Hydrolase
Gene Ontology (GO)
Biological_process	DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ATP-dependent helicase activity Inferred from electronic annotation. Source: InterPro damaged DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1F5E0 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: D7867DE4A9BD3BA5	FASTA	1,155	130,362
	10 20 30 40 50 60 MTTHSLLSLF SAQGAGDKKA IGNLHGASLA LAIAELANAH TSHTLLAVPD PQTALKLLHE 70 80 90 100 110 120 VEQFSHSEVA LFPDWETLPY DNFSPHQDII SDRISRLYQL PSLTRGITIV PVSTLLQRQS 130 140 150 160 170 180 PRDFLLQHTL IVKRGDHFSL DKLRLQLENS SYRHVDQVFG PGEYASRGSI LDLFPMGSSD 190 200 210 220 230 240 PFRIDFFDDE IDTIRTFDPD NQRSIAEMDE IRLLPAHEFP TTAAAIEEFR NRWRQRFEAR 250 260 270 280 290 300 REPESVYSQV SKGTWPAGIE YWQPLFFEHS ETLFDYLPAN SQLLVVGELE KAIDQFLTDV 310 320 330 340 350 360 DYRYDQRNID PLRPLLPPNE LWLRKDELFA HFKTLPQVQL TSSPIELRAG RMNAQVQPLP 370 380 390 400 410 420 VLAVEHQNKE PLAALRQFSE QFTGKIIFSV ESEGRREALL ELLQRIKLRP QSQNDFSLAC 430 440 450 460 470 480 QQTEKYSLVL GSAERGFIYG DNQVALICES DLLGDRVIQR RRKKDRKNVT NSDAVIRNLA 490 500 510 520 530 540 ELKPGQPVVH IDHGIGRYLG LQTLEAGGMV SEYVMLEYQN EAKLYVPVSS LNLISRYSGG 550 560 570 580 590 600 AEEAAQLHKL GGEAWVKARR KAAEKVRDVA AELLDVYAKR EIKPGFKFHL DREQYATFKA 610 620 630 640 650 660 TFPFEETDDQ AMAINAVLSD MCQAKAMDRL VCGDVGFGKT EVAMRAAFVA TDNGKQVAVL 670 680 690 700 710 720 VPTTLLAQQH FENFRDRFAN LPIRVEVLSR FKSAKEQKQI LQDVADGKVD ILVGTHKLLS 730 740 750 760 770 780 SEIRFADLGL LIVDEEHRFG VRQKEKVKAM RADVDILTLT ATPIPRTLNM AMSGMRDLSI 790 800 810 820 830 840 IATPPARRLA IKTFVRQSED SVIREAVLRE IMRGGQVYFL HNQVETIDKV AADLEKLVPE 850 860 870 880 890 900 ARITVAHGQM RERELEKVMN DFYHQRFNLL VCTTIIETGI DVPTANTIIM DRADSLGLAQ 910 920 930 940 950 960 LHQLRGRVGR SHHQAYAYLL TPPPKAITKD AVKRLEAIAS LEDLGAGFTL ATHDLEIRGA 970 980 990 1000 1010 1020 GELLGEEQSG QIQSVGFTLY MEMLEQAVEA LKSGKEPALD DLLREQTEVE MRLPALLPEE 1030 1040 1050 1060 1070 1080 YIPDINTRLS MYKQIASVAS KDELAELKVE LIDRFGKLPD AALNLLAIAE LKLNAMRLKV 1090 1100 1110 1120 1130 1140 RKIEAHERGG YVEFYPNADI NPVFLVKLLQ SQPKLLAMDG PTKLKFTLPL VERSARIQFV 1150 ADMLKNFQQN VLPAR

References

[1]	Heidelberg J., Sebastian Y. Submitted (JAN-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: 2740-80 EMBL EAX58532.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AAUT01000025 Genomic DNA. Translation: EAX58532.1.
3D structure databases
ProteinModelPortal	A1F5E0.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EAX58532; EAX58532; VC274080_1928.
PATRIC	28011667. VBIVibCho84837_1724.
Family and domain databases
InterPro	IPR003711. CarD-like/TRCF_domain. IPR011545. DNA/RNA_helicase_DEAD/DEAH_N. IPR014001. Helicase_ATP-bd. IPR001650. Helicase_C. IPR004576. Mfd. IPR005118. Tscpt_repair-coupling_fac_dom. [Graphical view]
Pfam	PF02559. CarD_CdnL_TRCF. 1 hit. PF00270. DEAD. 1 hit. PF00271. Helicase_C. 1 hit. PF03461. TRCF. 1 hit. [Graphical view]
SMART	SM01058. CarD_TRCF. 1 hit. SM00487. DEXDc. 1 hit. SM00490. HELICc. 1 hit. SM00982. TRCF. 1 hit. [Graphical view]
SUPFAM	SSF141259. SSF141259. 1 hit.
TIGRFAMs	TIGR00580. mfd. 1 hit.
PROSITE	PS51192. HELICASE_ATP_BIND_1. 1 hit. PS51194. HELICASE_CTER. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A1F5E0_VIBCL

Accession

Primary (citable) accession number: A1F5E0

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	April 3, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)