Unreviewed, UniProtKB/TrEMBL A1EA78 (A1EA78_RAT)

Names and origin

Protein names

Submitted name:
    Voltage-dependent calcium channel T type alpha 1G subunit domain II EMBL ABL63741.1

Gene names

Name:

Cacna1g EMBL ABL63741.1

Organism

Rattus norvegicus (Rat) EMBL ABL63741.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	308 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level.

Ontologies

Keywords
Biological process	Ion transport Transport
Cellular component	Membrane
Domain	Transmembrane RuleBase RU003378V0
Molecular function	Ionic channel RuleBase RU003378V0
Gene Ontology (GO)
Biological process	artery smooth muscle contraction Inferred from mutant phenotype. Source: RGD calcium ion transport Inferred from electronic annotation. Source: InterPro elevation of cytosolic calcium ion concentration Inferred from mutant phenotype. Source: RGD regulation of atrial cardiomyocyte membrane depolarization Inferred from electronic annotation. Source: Compara regulation of heart rate Inferred from electronic annotation. Source: Compara response to nickel ion Inferred from electronic annotation. Source: Compara transmembrane transport Inferred from electronic annotation. Source: InterPro
Cellular component	cell soma Inferred from direct assay. Source: RGD dendrite Inferred from direct assay. Source: RGD integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW perinuclear region of cytoplasm Inferred from direct assay. Source: RGD plasma membrane Inferred from direct assay. Source: RGD
Molecular function	low voltage-gated calcium channel activity Inferred from direct assay. Source: RGD
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL ABL63741.1
	Non-terminal residue	308	1	EMBL ABL63741.1

Sequences

	Sequence		Length	Mass (Da)
	A1EA78-1 [UniParc]. Last modified January 23, 2007. Version 1. Checksum: BE72DBEE241DE059	FASTA	308	34,733
	10 20 30 40 50 60 AFWRLICDTF RKIVDSKYFG RGIMIAILVN TLSMGIEYHE QPEELTNALE ISNIVFTSLF 70 80 90 100 110 120 ALEMLLKLLV YGPFGYIKNP YNIFDGVIVV ISVWEIVGQQ GGGLSVLRTF RLMRVLKLVR 130 140 150 160 170 180 FLPALQRQLV VLMKTMDNVA TFCMLLMLFI FIFSILGMHL FGCKFASERD GDTLPDRKNF 190 200 210 220 230 240 DSLLWAIVTV FQILTQEDWN RVLYNGMAST SSWAALYFIA LMTFGNYVLF NLLVAILVEG 250 260 270 280 290 300 FQAEEIGKRE DASGQLSCIQ LPVNSQGGDA TKSESEPDFF SPSVDGDGDR KKRLALVALG EHAELRKS

References

[1]

"High-voltage activated nifedipine-insensitive calcium channels control tone of rat basilar artery." Navarro-Gonzalez M.F., Grayson T.H., Hill C.E. Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: W EMBL ABL63741.1. Tissue: Basilar artery EMBL ABL63741.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	EF116286 mRNA. Translation: ABL63741.1.
IPI	IPI00199192.
UniGene	Rn.86960
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A1EA78.
Genome annotation databases
Ensembl	ENSRNOT00000004004; ENSRNOP00000004004; ENSRNOG00000002981; Rattus norvegicus. [Genome view] ENSRNOT00000041615; ENSRNOP00000046908; ENSRNOG00000002981; Rattus norvegicus. [Genome view] ENSRNOT00000051536; ENSRNOP00000049796; ENSRNOG00000002981; Rattus norvegicus. [Genome view] ENSRNOT00000067416; ENSRNOP00000061436; ENSRNOG00000002981; Rattus norvegicus. [Genome view]
Phylogenomic databases
HOVERGEN	A1EA78.
InParanoid	A1EA78.
Gene expression databases
Genevestigator	A1EA78.
Family and domain databases
InterPro	IPR005821. Ion_trans. IPR005445. VDCC_T_a1su. [Graphical view]
PANTHER	PTHR10037:SF44. TVDCCAlpha1. 1 hit.
Pfam	PF00520. Ion_trans. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A1EA78_RAT

Accession

Primary (citable) accession number: A1EA78

Entry history

Integrated into UniProtKB/TrEMBL:	January 23, 2007
Last sequence update:	January 23, 2007
Last modified:	January 19, 2010
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)