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A1EA59

- NU4C_AGRST

UniProt

A1EA59 - NU4C_AGRST

Protein

NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

Gene

ndhD

Organism
Agrostis stolonifera (Creeping bentgrass)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 28 (01 Oct 2014)
      Sequence version 1 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.UniRule annotation

    GO - Molecular functioni

    1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
    2. quinone binding Source: UniProtKB-KW

    GO - Biological processi

    1. ATP synthesis coupled electron transport Source: InterPro

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Ligandi

    NAD, NADP, Plastoquinone

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    NAD(P)H-quinone oxidoreductase chain 4, chloroplasticUniRule annotation (EC:1.6.5.-UniRule annotation)
    Alternative name(s):
    NAD(P)H dehydrogenase, chain 4UniRule annotation
    NADH-plastoquinone oxidoreductase chain 4UniRule annotation
    Gene namesi
    Name:ndhDUniRule annotation
    Encoded oniPlastid; Chloroplast
    OrganismiAgrostis stolonifera (Creeping bentgrass)
    Taxonomic identifieri63632 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladePooideaePoeaeAgrostidinaeAgrostis

    Organism-specific databases

    GrameneiA1EA59.

    Subcellular locationi

    Plastidchloroplast thylakoid membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

    GO - Cellular componenti

    1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
    2. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Chloroplast, Membrane, Plastid, Thylakoid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 500500NAD(P)H-quinone oxidoreductase chain 4, chloroplasticPRO_0000275901Add
    BLAST

    Keywords - PTMi

    Quinone

    Structurei

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei4 – 2421HelicalUniRule annotationAdd
    BLAST
    Transmembranei37 – 5721HelicalUniRule annotationAdd
    BLAST
    Transmembranei87 – 10721HelicalUniRule annotationAdd
    BLAST
    Transmembranei113 – 13018HelicalUniRule annotationAdd
    BLAST
    Transmembranei134 – 15421HelicalUniRule annotationAdd
    BLAST
    Transmembranei167 – 18721HelicalUniRule annotationAdd
    BLAST
    Transmembranei211 – 23121HelicalUniRule annotationAdd
    BLAST
    Transmembranei242 – 26221HelicalUniRule annotationAdd
    BLAST
    Transmembranei272 – 29221HelicalUniRule annotationAdd
    BLAST
    Transmembranei313 – 33321HelicalUniRule annotationAdd
    BLAST
    Transmembranei334 – 35421HelicalUniRule annotationAdd
    BLAST
    Transmembranei386 – 40621HelicalUniRule annotationAdd
    BLAST
    Transmembranei417 – 43721HelicalUniRule annotationAdd
    BLAST
    Transmembranei462 – 48221HelicalUniRule annotationAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the complex I subunit 4 family.UniRule annotation

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Family and domain databases

    HAMAPiMF_00491. NDH1_NuoM.
    InterProiIPR022997. NADH_Q_OxRdtase_chain4.
    IPR010227. NADH_Q_OxRdtase_chainM/4.
    IPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR003918. NADH_UbQ_OxRdtase.
    [Graphical view]
    PfamiPF00361. Oxidored_q1. 1 hit.
    [Graphical view]
    PRINTSiPR01437. NUOXDRDTASE4.
    TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A1EA59-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSYFPWLTIL VVLPIFAGSL IFFLPHRGNK IVRWYTISIC LLEFLLMTYA    50
    FCYHFQLEDP LIQLKEDYKW IDILDFHWRL GIDGLSVGSI LLTGFITTLA 100
    TLAAWPVTRN SRLFYFLMLA MYSGQIGLFS SRDLLLFFIM WELELIPVYL 150
    LLSMWGGKRR LYSATKFILY TAGGSIFFLI GVLGMGLYGS NEPGLDLERL 200
    INQSYPTTLE ILLYFGFLIA YAVKLPIIPL HTWLPDTHGE AHYSTCMLLA 250
    GILLKMGAYG LIRINMELLP HAHYLFSPWL VIIGAIQIIY AASTSLGQRN 300
    FKKRIAYSSV SHMGFIIIGI GSITNIGLNG AILQILSHGF IGATLFFLAG 350
    TASDRMRLVY LEELGGISIP MPKIFTMFSS FSMASLALPG MSGFVAELVV 400
    FFGLITSPKF LLMPKMLITF VMAIGMILTP IYLLSMLRQM FYGYKLFNVP 450
    NANFVDSGPR ELFILICIFL PVIGIGIYPD LVLSLSVDRV EALLSNYYPK 500
    Length:500
    Mass (Da):56,349
    Last modified:January 23, 2007 - v1
    Checksum:i6D88DC14B3B61495
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF115543 Genomic DNA. Translation: ABK79631.1.
    RefSeqiYP_874787.1. NC_008591.1.

    Genome annotation databases

    GeneIDi4525036.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF115543 Genomic DNA. Translation: ABK79631.1 .
    RefSeqi YP_874787.1. NC_008591.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4525036.

    Organism-specific databases

    Gramenei A1EA59.

    Family and domain databases

    HAMAPi MF_00491. NDH1_NuoM.
    InterProi IPR022997. NADH_Q_OxRdtase_chain4.
    IPR010227. NADH_Q_OxRdtase_chainM/4.
    IPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR003918. NADH_UbQ_OxRdtase.
    [Graphical view ]
    Pfami PF00361. Oxidored_q1. 1 hit.
    [Graphical view ]
    PRINTSi PR01437. NUOXDRDTASE4.
    TIGRFAMsi TIGR01972. NDH_I_M. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes."
      Saski C., Lee S.-B., Fjellheim S., Guda C., Jansen R.K., Luo H., Tomkins J., Rognli O.A., Daniell H., Clarke J.L.
      Theor. Appl. Genet. 115:571-590(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Penn A-4.

    Entry informationi

    Entry nameiNU4C_AGRST
    AccessioniPrimary (citable) accession number: A1EA59
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 6, 2007
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 28 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3