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Protein

NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

Gene

ndhD

Organism
Agrostis stolonifera (Creeping bentgrass)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.UniRule annotation

GO - Molecular functioni

  1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
  2. quinone binding Source: UniProtKB-KW

GO - Biological processi

  1. ATP synthesis coupled electron transport Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

NAD, NADP, Plastoquinone

Names & Taxonomyi

Protein namesi
Recommended name:
NAD(P)H-quinone oxidoreductase chain 4, chloroplasticUniRule annotation (EC:1.6.5.-UniRule annotation)
Alternative name(s):
NAD(P)H dehydrogenase, chain 4UniRule annotation
NADH-plastoquinone oxidoreductase chain 4UniRule annotation
Gene namesi
Name:ndhDUniRule annotation
Encoded oniPlastid; Chloroplast
OrganismiAgrostis stolonifera (Creeping bentgrass)
Taxonomic identifieri63632 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladePooideaePoeaeAgrostidinaeAgrostis

Organism-specific databases

GrameneiA1EA59.

Subcellular locationi

Plastidchloroplast thylakoid membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei4 – 2421HelicalUniRule annotationAdd
BLAST
Transmembranei37 – 5721HelicalUniRule annotationAdd
BLAST
Transmembranei87 – 10721HelicalUniRule annotationAdd
BLAST
Transmembranei113 – 13018HelicalUniRule annotationAdd
BLAST
Transmembranei134 – 15421HelicalUniRule annotationAdd
BLAST
Transmembranei167 – 18721HelicalUniRule annotationAdd
BLAST
Transmembranei211 – 23121HelicalUniRule annotationAdd
BLAST
Transmembranei242 – 26221HelicalUniRule annotationAdd
BLAST
Transmembranei272 – 29221HelicalUniRule annotationAdd
BLAST
Transmembranei313 – 33321HelicalUniRule annotationAdd
BLAST
Transmembranei334 – 35421HelicalUniRule annotationAdd
BLAST
Transmembranei386 – 40621HelicalUniRule annotationAdd
BLAST
Transmembranei417 – 43721HelicalUniRule annotationAdd
BLAST
Transmembranei462 – 48221HelicalUniRule annotationAdd
BLAST

GO - Cellular componenti

  1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
  2. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 500500NAD(P)H-quinone oxidoreductase chain 4, chloroplasticPRO_0000275901Add
BLAST

Keywords - PTMi

Quinone

Family & Domainsi

Sequence similaritiesi

Belongs to the complex I subunit 4 family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

HAMAPiMF_00491. NDH1_NuoM.
InterProiIPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR003918. NADH_UbQ_OxRdtase.
[Graphical view]
PfamiPF00361. Oxidored_q1. 1 hit.
[Graphical view]
PRINTSiPR01437. NUOXDRDTASE4.
TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.

Sequencei

Sequence statusi: Complete.

A1EA59-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYFPWLTIL VVLPIFAGSL IFFLPHRGNK IVRWYTISIC LLEFLLMTYA
60 70 80 90 100
FCYHFQLEDP LIQLKEDYKW IDILDFHWRL GIDGLSVGSI LLTGFITTLA
110 120 130 140 150
TLAAWPVTRN SRLFYFLMLA MYSGQIGLFS SRDLLLFFIM WELELIPVYL
160 170 180 190 200
LLSMWGGKRR LYSATKFILY TAGGSIFFLI GVLGMGLYGS NEPGLDLERL
210 220 230 240 250
INQSYPTTLE ILLYFGFLIA YAVKLPIIPL HTWLPDTHGE AHYSTCMLLA
260 270 280 290 300
GILLKMGAYG LIRINMELLP HAHYLFSPWL VIIGAIQIIY AASTSLGQRN
310 320 330 340 350
FKKRIAYSSV SHMGFIIIGI GSITNIGLNG AILQILSHGF IGATLFFLAG
360 370 380 390 400
TASDRMRLVY LEELGGISIP MPKIFTMFSS FSMASLALPG MSGFVAELVV
410 420 430 440 450
FFGLITSPKF LLMPKMLITF VMAIGMILTP IYLLSMLRQM FYGYKLFNVP
460 470 480 490 500
NANFVDSGPR ELFILICIFL PVIGIGIYPD LVLSLSVDRV EALLSNYYPK
Length:500
Mass (Da):56,349
Last modified:January 23, 2007 - v1
Checksum:i6D88DC14B3B61495
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF115543 Genomic DNA. Translation: ABK79631.1.
RefSeqiYP_874787.1. NC_008591.1.

Genome annotation databases

GeneIDi4525036.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF115543 Genomic DNA. Translation: ABK79631.1.
RefSeqiYP_874787.1. NC_008591.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi4525036.

Organism-specific databases

GrameneiA1EA59.

Family and domain databases

HAMAPiMF_00491. NDH1_NuoM.
InterProiIPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR003918. NADH_UbQ_OxRdtase.
[Graphical view]
PfamiPF00361. Oxidored_q1. 1 hit.
[Graphical view]
PRINTSiPR01437. NUOXDRDTASE4.
TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes."
    Saski C., Lee S.-B., Fjellheim S., Guda C., Jansen R.K., Luo H., Tomkins J., Rognli O.A., Daniell H., Clarke J.L.
    Theor. Appl. Genet. 115:571-590(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Penn A-4.

Entry informationi

Entry nameiNU4C_AGRST
AccessioniPrimary (citable) accession number: A1EA59
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: January 23, 2007
Last modified: January 7, 2015
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.