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A1EA59 (NU4C_AGRST) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

EC=1.6.5.-
Alternative name(s):
NAD(P)H dehydrogenase, chain 4
NADH-plastoquinone oxidoreductase chain 4
Gene names
Name:ndhD
Encoded onPlastid; Chloroplast
OrganismAgrostis stolonifera (Creeping bentgrass)
Taxonomic identifier63632 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladePooideaePoeaeAgrostidinaeAgrostis

Protein attributes

Sequence length500 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol. HAMAP-Rule MF_00491

Subcellular location

Plastidchloroplast thylakoid membrane; Multi-pass membrane protein Potential HAMAP-Rule MF_00491.

Sequence similarities

Belongs to the complex I subunit 4 family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 500500NAD(P)H-quinone oxidoreductase chain 4, chloroplastic HAMAP-Rule MF_00491
PRO_0000275901

Regions

Transmembrane4 – 2421Helical; Potential
Transmembrane37 – 5721Helical; Potential
Transmembrane87 – 10721Helical; Potential
Transmembrane113 – 13018Helical; Potential
Transmembrane134 – 15421Helical; Potential
Transmembrane167 – 18721Helical; Potential
Transmembrane211 – 23121Helical; Potential
Transmembrane242 – 26221Helical; Potential
Transmembrane272 – 29221Helical; Potential
Transmembrane313 – 33321Helical; Potential
Transmembrane334 – 35421Helical; Potential
Transmembrane386 – 40621Helical; Potential
Transmembrane417 – 43721Helical; Potential
Transmembrane462 – 48221Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
A1EA59 [UniParc].

Last modified January 23, 2007. Version 1.
Checksum: 6D88DC14B3B61495

FASTA50056,349
        10         20         30         40         50         60 
MSYFPWLTIL VVLPIFAGSL IFFLPHRGNK IVRWYTISIC LLEFLLMTYA FCYHFQLEDP 

        70         80         90        100        110        120 
LIQLKEDYKW IDILDFHWRL GIDGLSVGSI LLTGFITTLA TLAAWPVTRN SRLFYFLMLA 

       130        140        150        160        170        180 
MYSGQIGLFS SRDLLLFFIM WELELIPVYL LLSMWGGKRR LYSATKFILY TAGGSIFFLI 

       190        200        210        220        230        240 
GVLGMGLYGS NEPGLDLERL INQSYPTTLE ILLYFGFLIA YAVKLPIIPL HTWLPDTHGE 

       250        260        270        280        290        300 
AHYSTCMLLA GILLKMGAYG LIRINMELLP HAHYLFSPWL VIIGAIQIIY AASTSLGQRN 

       310        320        330        340        350        360 
FKKRIAYSSV SHMGFIIIGI GSITNIGLNG AILQILSHGF IGATLFFLAG TASDRMRLVY 

       370        380        390        400        410        420 
LEELGGISIP MPKIFTMFSS FSMASLALPG MSGFVAELVV FFGLITSPKF LLMPKMLITF 

       430        440        450        460        470        480 
VMAIGMILTP IYLLSMLRQM FYGYKLFNVP NANFVDSGPR ELFILICIFL PVIGIGIYPD 

       490        500 
LVLSLSVDRV EALLSNYYPK 

« Hide

References

[1]"Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes."
Saski C., Lee S.-B., Fjellheim S., Guda C., Jansen R.K., Luo H., Tomkins J., Rognli O.A., Daniell H., Clarke J.L.
Theor. Appl. Genet. 115:571-590(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Penn A-4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
EF115543 Genomic DNA. Translation: ABK79631.1.
RefSeqYP_874787.1. NC_008591.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4525036.

Organism-specific databases

GrameneA1EA59.

Family and domain databases

HAMAPMF_00491. NDH1_NuoM.
InterProIPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR003918. NADH_UbQ_OxRdtase.
[Graphical view]
PfamPF00361. Oxidored_q1. 1 hit.
[Graphical view]
PRINTSPR01437. NUOXDRDTASE4.
TIGRFAMsTIGR01972. NDH_I_M. 1 hit.
ProtoNetSearch...

Entry information

Entry nameNU4C_AGRST
AccessionPrimary (citable) accession number: A1EA59
Entry history
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: January 23, 2007
Last modified: May 14, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families