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A1EA56

- NU5C_AGRST

UniProt

A1EA56 - NU5C_AGRST

Protein

NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

Gene

ndhF

Organism
Agrostis stolonifera (Creeping bentgrass)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity.By similarity

    Catalytic activityi

    NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.

    GO - Molecular functioni

    1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
    2. quinone binding Source: UniProtKB-KW

    GO - Biological processi

    1. ATP synthesis coupled electron transport Source: InterPro
    2. transport Source: UniProtKB-KW

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Biological processi

    Transport

    Keywords - Ligandi

    NAD, NADP, Plastoquinone

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC:1.6.5.-)
    Alternative name(s):
    NAD(P)H dehydrogenase subunit 5
    NADH-plastoquinone oxidoreductase subunit 5
    Gene namesi
    Name:ndhF
    Encoded oniPlastid; Chloroplast
    OrganismiAgrostis stolonifera (Creeping bentgrass)
    Taxonomic identifieri63632 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladePooideaePoeaeAgrostidinaeAgrostis

    Organism-specific databases

    GrameneiA1EA56.

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
    2. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Chloroplast, Membrane, Plastid, Thylakoid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 739739NAD(P)H-quinone oxidoreductase subunit 5, chloroplasticPRO_0000360908Add
    BLAST

    Keywords - PTMi

    Quinone

    Interactioni

    Subunit structurei

    NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.By similarity

    Structurei

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei9 – 2921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei39 – 5921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei89 – 10921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei125 – 14521HelicalSequence AnalysisAdd
    BLAST
    Transmembranei147 – 16721HelicalSequence AnalysisAdd
    BLAST
    Transmembranei185 – 20521HelicalSequence AnalysisAdd
    BLAST
    Transmembranei219 – 23921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei258 – 27821HelicalSequence AnalysisAdd
    BLAST
    Transmembranei280 – 30021HelicalSequence AnalysisAdd
    BLAST
    Transmembranei327 – 34721HelicalSequence AnalysisAdd
    BLAST
    Transmembranei354 – 37421HelicalSequence AnalysisAdd
    BLAST
    Transmembranei396 – 41621HelicalSequence AnalysisAdd
    BLAST
    Transmembranei425 – 44521HelicalSequence AnalysisAdd
    BLAST
    Transmembranei542 – 56221HelicalSequence AnalysisAdd
    BLAST
    Transmembranei610 – 63021HelicalSequence AnalysisAdd
    BLAST
    Transmembranei719 – 73921HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the complex I subunit 5 family.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Family and domain databases

    InterProiIPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
    IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
    IPR003945. NADHpl_OxRdtase_5.
    IPR018393. NADHpl_OxRdtase_5_subgr.
    [Graphical view]
    PfamiPF00361. Oxidored_q1. 1 hit.
    PF01010. Oxidored_q1_C. 1 hit.
    PF00662. Oxidored_q1_N. 1 hit.
    [Graphical view]
    PRINTSiPR01435. NPOXDRDTASE5.
    TIGRFAMsiTIGR01974. NDH_I_L. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A1EA56-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEHTYQYAWV IPLLPLPVIM SMGFGLFFIP TATKNLRRIW AFPSVLLLSI    50
    AMVFSVQLSI QQINGSSIYQ YLWSWTVNND FSLEFGYLID PLTSIMLILI 100
    TTVGILVLIY SDGYMSHDEG YLRFFVYISF FNTSMLGLVT SSNLIQIYFF 150
    WELVGMCSYL LIGFWFTRPL AASACQKAFV TNRVGDFGLL LGILGFFWIT 200
    GSLEFRDLFK IANNWIPNNG INSLLTTLCA FLLFLGAVAK SAQFPLHVWL 250
    PDAMEGPTPI SALIHAATMV AAGIFLLARL LPLFISLPLI MSLISLVGTI 300
    TLFLGATLAL AQRDIKRSLA YSTMSQLGYM MLALGIGSYQ AALFHLITHA 350
    YSKALLFLGS GSIIHSMEPL VGYSPDKSQN MVLMGGLRKY IPITRSTFLW 400
    GTLSLCGIPP LACFWSKDEI LSNSWLYSPF FGIIASFTAG LTAFYMFRIY 450
    LLTFDGYLRV HFQNYSSTKE GPLYSISLWG KRIPKGVNGD FVLSTTKSGV 500
    SFFSQNIPKM QGNTTNRIGC FSTSFGAKKT FAYPHETGNT MLFPLLILLL 550
    FTFFIGFIGI SFDNGATDNG IAGLTILSKW LTPSINFTQE SSNSSINSYE 600
    FITNAISSVS LAIFGLFIAY IFYGSAYSFF QNLDLQNSFY KESPKKAFFG 650
    KVKKKIYSWS YNRGYIDIFY TRVFTLGIRG LTELTEFFDK GVIDGITNGV 700
    GLVSFCIGEE IKYVGGGRIS SYLFFFLCYV SIFLFFFLF 739
    Length:739
    Mass (Da):82,746
    Last modified:January 23, 2007 - v1
    Checksum:i0FB9FC89321D7ABF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF115543 Genomic DNA. Translation: ABK79628.1.
    RefSeqiYP_874784.1. NC_008591.1.

    Genome annotation databases

    GeneIDi4525032.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF115543 Genomic DNA. Translation: ABK79628.1 .
    RefSeqi YP_874784.1. NC_008591.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4525032.

    Organism-specific databases

    Gramenei A1EA56.

    Family and domain databases

    InterProi IPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
    IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
    IPR003945. NADHpl_OxRdtase_5.
    IPR018393. NADHpl_OxRdtase_5_subgr.
    [Graphical view ]
    Pfami PF00361. Oxidored_q1. 1 hit.
    PF01010. Oxidored_q1_C. 1 hit.
    PF00662. Oxidored_q1_N. 1 hit.
    [Graphical view ]
    PRINTSi PR01435. NPOXDRDTASE5.
    TIGRFAMsi TIGR01974. NDH_I_L. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes."
      Saski C., Lee S.-B., Fjellheim S., Guda C., Jansen R.K., Luo H., Tomkins J., Rognli O.A., Daniell H., Clarke J.L.
      Theor. Appl. Genet. 115:571-590(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Penn A-4.

    Entry informationi

    Entry nameiNU5C_AGRST
    AccessioniPrimary (citable) accession number: A1EA56
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 20, 2009
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3