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A1EA56 (NU5C_AGRST) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

EC=1.6.5.-
Alternative name(s):
NAD(P)H dehydrogenase subunit 5
NADH-plastoquinone oxidoreductase subunit 5
Gene names
Name:ndhF
Encoded onPlastid; Chloroplast
OrganismAgrostis stolonifera (Creeping bentgrass)
Taxonomic identifier63632 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladePooideaePoeaeAgrostidinaeAgrostis

Protein attributes

Sequence length739 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity.

Catalytic activity

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.

Subunit structure

NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus By similarity.

Subcellular location

Plastidchloroplast thylakoid membrane; Multi-pass membrane protein By similarity.

Sequence similarities

Belongs to the complex I subunit 5 family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 739739NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
PRO_0000360908

Regions

Transmembrane9 – 2921Helical; Potential
Transmembrane39 – 5921Helical; Potential
Transmembrane89 – 10921Helical; Potential
Transmembrane125 – 14521Helical; Potential
Transmembrane147 – 16721Helical; Potential
Transmembrane185 – 20521Helical; Potential
Transmembrane219 – 23921Helical; Potential
Transmembrane258 – 27821Helical; Potential
Transmembrane280 – 30021Helical; Potential
Transmembrane327 – 34721Helical; Potential
Transmembrane354 – 37421Helical; Potential
Transmembrane396 – 41621Helical; Potential
Transmembrane425 – 44521Helical; Potential
Transmembrane542 – 56221Helical; Potential
Transmembrane610 – 63021Helical; Potential
Transmembrane719 – 73921Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
A1EA56 [UniParc].

Last modified January 23, 2007. Version 1.
Checksum: 0FB9FC89321D7ABF

FASTA73982,746
        10         20         30         40         50         60 
MEHTYQYAWV IPLLPLPVIM SMGFGLFFIP TATKNLRRIW AFPSVLLLSI AMVFSVQLSI 

        70         80         90        100        110        120 
QQINGSSIYQ YLWSWTVNND FSLEFGYLID PLTSIMLILI TTVGILVLIY SDGYMSHDEG 

       130        140        150        160        170        180 
YLRFFVYISF FNTSMLGLVT SSNLIQIYFF WELVGMCSYL LIGFWFTRPL AASACQKAFV 

       190        200        210        220        230        240 
TNRVGDFGLL LGILGFFWIT GSLEFRDLFK IANNWIPNNG INSLLTTLCA FLLFLGAVAK 

       250        260        270        280        290        300 
SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLLARL LPLFISLPLI MSLISLVGTI 

       310        320        330        340        350        360 
TLFLGATLAL AQRDIKRSLA YSTMSQLGYM MLALGIGSYQ AALFHLITHA YSKALLFLGS 

       370        380        390        400        410        420 
GSIIHSMEPL VGYSPDKSQN MVLMGGLRKY IPITRSTFLW GTLSLCGIPP LACFWSKDEI 

       430        440        450        460        470        480 
LSNSWLYSPF FGIIASFTAG LTAFYMFRIY LLTFDGYLRV HFQNYSSTKE GPLYSISLWG 

       490        500        510        520        530        540 
KRIPKGVNGD FVLSTTKSGV SFFSQNIPKM QGNTTNRIGC FSTSFGAKKT FAYPHETGNT 

       550        560        570        580        590        600 
MLFPLLILLL FTFFIGFIGI SFDNGATDNG IAGLTILSKW LTPSINFTQE SSNSSINSYE 

       610        620        630        640        650        660 
FITNAISSVS LAIFGLFIAY IFYGSAYSFF QNLDLQNSFY KESPKKAFFG KVKKKIYSWS 

       670        680        690        700        710        720 
YNRGYIDIFY TRVFTLGIRG LTELTEFFDK GVIDGITNGV GLVSFCIGEE IKYVGGGRIS 

       730 
SYLFFFLCYV SIFLFFFLF 

« Hide

References

[1]"Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes."
Saski C., Lee S.-B., Fjellheim S., Guda C., Jansen R.K., Luo H., Tomkins J., Rognli O.A., Daniell H., Clarke J.L.
Theor. Appl. Genet. 115:571-590(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Penn A-4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
EF115543 Genomic DNA. Translation: ABK79628.1.
RefSeqYP_874784.1. NC_008591.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4525032.

Organism-specific databases

GrameneA1EA56.

Family and domain databases

InterProIPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
[Graphical view]
PfamPF00361. Oxidored_q1. 1 hit.
PF01010. Oxidored_q1_C. 1 hit.
PF00662. Oxidored_q1_N. 1 hit.
[Graphical view]
PRINTSPR01435. NPOXDRDTASE5.
TIGRFAMsTIGR01974. NDH_I_L. 1 hit.
ProtoNetSearch...

Entry information

Entry nameNU5C_AGRST
AccessionPrimary (citable) accession number: A1EA56
Entry history
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 23, 2007
Last modified: May 14, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families