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A1EA56

- NU5C_AGRST

UniProt

A1EA56 - NU5C_AGRST

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Protein

NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

Gene
ndhF
Organism
Agrostis stolonifera (Creeping bentgrass)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity.

Catalytic activityi

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.

GO - Molecular functioni

  1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
  2. quinone binding Source: UniProtKB-KW

GO - Biological processi

  1. ATP synthesis coupled electron transport Source: InterPro
  2. transport Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

Transport

Keywords - Ligandi

NAD, NADP, Plastoquinone

Names & Taxonomyi

Protein namesi
Recommended name:
NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC:1.6.5.-)
Alternative name(s):
NAD(P)H dehydrogenase subunit 5
NADH-plastoquinone oxidoreductase subunit 5
Gene namesi
Name:ndhF
Encoded oniPlastid; Chloroplast
OrganismiAgrostis stolonifera (Creeping bentgrass)
Taxonomic identifieri63632 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladePooideaePoeaeAgrostidinaeAgrostis

Organism-specific databases

GrameneiA1EA56.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei9 – 2921Helical; Reviewed predictionAdd
BLAST
Transmembranei39 – 5921Helical; Reviewed predictionAdd
BLAST
Transmembranei89 – 10921Helical; Reviewed predictionAdd
BLAST
Transmembranei125 – 14521Helical; Reviewed predictionAdd
BLAST
Transmembranei147 – 16721Helical; Reviewed predictionAdd
BLAST
Transmembranei185 – 20521Helical; Reviewed predictionAdd
BLAST
Transmembranei219 – 23921Helical; Reviewed predictionAdd
BLAST
Transmembranei258 – 27821Helical; Reviewed predictionAdd
BLAST
Transmembranei280 – 30021Helical; Reviewed predictionAdd
BLAST
Transmembranei327 – 34721Helical; Reviewed predictionAdd
BLAST
Transmembranei354 – 37421Helical; Reviewed predictionAdd
BLAST
Transmembranei396 – 41621Helical; Reviewed predictionAdd
BLAST
Transmembranei425 – 44521Helical; Reviewed predictionAdd
BLAST
Transmembranei542 – 56221Helical; Reviewed predictionAdd
BLAST
Transmembranei610 – 63021Helical; Reviewed predictionAdd
BLAST
Transmembranei719 – 73921Helical; Reviewed predictionAdd
BLAST

GO - Cellular componenti

  1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
  2. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 739739NAD(P)H-quinone oxidoreductase subunit 5, chloroplasticPRO_0000360908Add
BLAST

Keywords - PTMi

Quinone

Interactioni

Subunit structurei

NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus By similarity.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

InterProiIPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
[Graphical view]
PfamiPF00361. Oxidored_q1. 1 hit.
PF01010. Oxidored_q1_C. 1 hit.
PF00662. Oxidored_q1_N. 1 hit.
[Graphical view]
PRINTSiPR01435. NPOXDRDTASE5.
TIGRFAMsiTIGR01974. NDH_I_L. 1 hit.

Sequencei

Sequence statusi: Complete.

A1EA56-1 [UniParc]FASTAAdd to Basket

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MEHTYQYAWV IPLLPLPVIM SMGFGLFFIP TATKNLRRIW AFPSVLLLSI    50
AMVFSVQLSI QQINGSSIYQ YLWSWTVNND FSLEFGYLID PLTSIMLILI 100
TTVGILVLIY SDGYMSHDEG YLRFFVYISF FNTSMLGLVT SSNLIQIYFF 150
WELVGMCSYL LIGFWFTRPL AASACQKAFV TNRVGDFGLL LGILGFFWIT 200
GSLEFRDLFK IANNWIPNNG INSLLTTLCA FLLFLGAVAK SAQFPLHVWL 250
PDAMEGPTPI SALIHAATMV AAGIFLLARL LPLFISLPLI MSLISLVGTI 300
TLFLGATLAL AQRDIKRSLA YSTMSQLGYM MLALGIGSYQ AALFHLITHA 350
YSKALLFLGS GSIIHSMEPL VGYSPDKSQN MVLMGGLRKY IPITRSTFLW 400
GTLSLCGIPP LACFWSKDEI LSNSWLYSPF FGIIASFTAG LTAFYMFRIY 450
LLTFDGYLRV HFQNYSSTKE GPLYSISLWG KRIPKGVNGD FVLSTTKSGV 500
SFFSQNIPKM QGNTTNRIGC FSTSFGAKKT FAYPHETGNT MLFPLLILLL 550
FTFFIGFIGI SFDNGATDNG IAGLTILSKW LTPSINFTQE SSNSSINSYE 600
FITNAISSVS LAIFGLFIAY IFYGSAYSFF QNLDLQNSFY KESPKKAFFG 650
KVKKKIYSWS YNRGYIDIFY TRVFTLGIRG LTELTEFFDK GVIDGITNGV 700
GLVSFCIGEE IKYVGGGRIS SYLFFFLCYV SIFLFFFLF 739
Length:739
Mass (Da):82,746
Last modified:January 23, 2007 - v1
Checksum:i0FB9FC89321D7ABF
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
EF115543 Genomic DNA. Translation: ABK79628.1.
RefSeqiYP_874784.1. NC_008591.1.

Genome annotation databases

GeneIDi4525032.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
EF115543 Genomic DNA. Translation: ABK79628.1 .
RefSeqi YP_874784.1. NC_008591.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4525032.

Organism-specific databases

Gramenei A1EA56.

Family and domain databases

InterProi IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
[Graphical view ]
Pfami PF00361. Oxidored_q1. 1 hit.
PF01010. Oxidored_q1_C. 1 hit.
PF00662. Oxidored_q1_N. 1 hit.
[Graphical view ]
PRINTSi PR01435. NPOXDRDTASE5.
TIGRFAMsi TIGR01974. NDH_I_L. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes."
    Saski C., Lee S.-B., Fjellheim S., Guda C., Jansen R.K., Luo H., Tomkins J., Rognli O.A., Daniell H., Clarke J.L.
    Theor. Appl. Genet. 115:571-590(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Penn A-4.

Entry informationi

Entry nameiNU5C_AGRST
AccessioniPrimary (citable) accession number: A1EA56
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 23, 2007
Last modified: May 14, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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