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A1E9X4

- NU4C_SORBI

UniProt

A1E9X4 - NU4C_SORBI

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Protein

NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

Gene

ndhD

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.UniRule annotation

GO - Molecular functioni

  1. NADH dehydrogenase (ubiquinone) activity Source: EnsemblPlants/Gramene
  2. quinone binding Source: UniProtKB-KW

GO - Biological processi

  1. ATP synthesis coupled electron transport Source: EnsemblPlants/Gramene
  2. RNA modification Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

NAD, NADP, Plastoquinone

Names & Taxonomyi

Protein namesi
Recommended name:
NAD(P)H-quinone oxidoreductase chain 4, chloroplasticUniRule annotation (EC:1.6.5.-UniRule annotation)
Alternative name(s):
NAD(P)H dehydrogenase, chain 4UniRule annotation
NADH-plastoquinone oxidoreductase chain 4UniRule annotation
Gene namesi
Name:ndhDUniRule annotation
Encoded oniPlastid; Chloroplast
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chloroplast

Organism-specific databases

GrameneiA1E9X4.

Subcellular locationi

Plastidchloroplast thylakoid membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

GO - Cellular componenti

  1. chloroplast thylakoid membrane Source: EnsemblPlants/Gramene
  2. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 500500NAD(P)H-quinone oxidoreductase chain 4, chloroplasticPRO_0000275922Add
BLAST

Keywords - PTMi

Quinone

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb03g020185.1.

Structurei

Transmembrane

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei4 – 2421HelicalUniRule annotationAdd
BLAST
Transmembranei35 – 5521HelicalUniRule annotationAdd
BLAST
Transmembranei87 – 10721HelicalUniRule annotationAdd
BLAST
Transmembranei111 – 13121HelicalUniRule annotationAdd
BLAST
Transmembranei134 – 15421HelicalUniRule annotationAdd
BLAST
Transmembranei167 – 18721HelicalUniRule annotationAdd
BLAST
Transmembranei211 – 23121HelicalUniRule annotationAdd
BLAST
Transmembranei242 – 26221HelicalUniRule annotationAdd
BLAST
Transmembranei272 – 29221HelicalUniRule annotationAdd
BLAST
Transmembranei313 – 33321HelicalUniRule annotationAdd
BLAST
Transmembranei334 – 35421HelicalUniRule annotationAdd
BLAST
Transmembranei386 – 40621HelicalUniRule annotationAdd
BLAST
Transmembranei417 – 43721HelicalUniRule annotationAdd
BLAST
Transmembranei462 – 48221HelicalUniRule annotationAdd
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the complex I subunit 4 family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG1008.
InParanoidiA1E9X4.
KOiK05575.

Family and domain databases

HAMAPiMF_00491. NDH1_NuoM.
InterProiIPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR003918. NADH_UbQ_OxRdtase.
[Graphical view]
PfamiPF00361. Oxidored_q1. 1 hit.
[Graphical view]
PRINTSiPR01437. NUOXDRDTASE4.
TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.

Sequencei

Sequence statusi: Complete.

A1E9X4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSYFPWLTIL VVLPIFAGSL IFFLPHKGNK IVRWYTIAIC LLEFLIMTYA
60 70 80 90 100
FCYHFQLEDP LIQLKEDSKW IDVFDFHWRL GIDGLSLGSI LLTGFITTLA
110 120 130 140 150
TLAAWPVTRN SQLFYFLMLA MYSGQIGLFS SRDLLLFFIM WELELIPVYL
160 170 180 190 200
LLSMWGGKRR LYSATKFILY TAGGSIFFLI GVLGMGLYGS NEPGLDLERL
210 220 230 240 250
INQSYPTTLE ILLYFGFLIA YAVKLPIIPL HTWLPDTHGE AHYSTCMLLA
260 270 280 290 300
GILLKMGAYG LIRVNMELLP HAHYLFSPWL VIIGAVQIIY AASTSLGQRN
310 320 330 340 350
FKKRIAYSSV SHMGFIIIGI GSITNIGLNG AILQILSHGF IGATLFFLAG
360 370 380 390 400
TACDRMRLVY LEELGGISIP MPKIFTMFSS FSMASLALPG MSGFVAELVV
410 420 430 440 450
FFGLITSPKF MLMPKMLITF VMAIGMILTP IYLLSMLRQM FYGYKLFHVP
460 470 480 490 500
NKNFVDSGPR ELFLLICIFL PVIGIGIYPD FVLSLSVDRV EALLSNYYTK
Length:500
Mass (Da):56,360
Last modified:January 23, 2007 - v1
Checksum:iE6C0F322543BA6B2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
EF115542 Genomic DNA. Translation: ABK79546.1.
RefSeqiYP_899457.1. NC_008602.1.

Genome annotation databases

GeneIDi4549152.
KEGGisbi:SobiCp073.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
EF115542 Genomic DNA. Translation: ABK79546.1 .
RefSeqi YP_899457.1. NC_008602.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 4558.Sb03g020185.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4549152.
KEGGi sbi:SobiCp073.

Organism-specific databases

Gramenei A1E9X4.

Phylogenomic databases

eggNOGi COG1008.
InParanoidi A1E9X4.
KOi K05575.

Family and domain databases

HAMAPi MF_00491. NDH1_NuoM.
InterProi IPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR003918. NADH_UbQ_OxRdtase.
[Graphical view ]
Pfami PF00361. Oxidored_q1. 1 hit.
[Graphical view ]
PRINTSi PR01437. NUOXDRDTASE4.
TIGRFAMsi TIGR01972. NDH_I_M. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes."
    Saski C., Lee S.-B., Fjellheim S., Guda C., Jansen R.K., Luo H., Tomkins J., Rognli O.A., Daniell H., Clarke J.L.
    Theor. Appl. Genet. 115:571-590(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623.

Entry informationi

Entry nameiNU4C_SORBI
AccessioniPrimary (citable) accession number: A1E9X4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: January 23, 2007
Last modified: October 29, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3