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A1E9X4 (NU4C_SORBI) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

EC=1.6.5.-
Alternative name(s):
NAD(P)H dehydrogenase, chain 4
NADH-plastoquinone oxidoreductase chain 4
Gene names
Name:ndhD
Encoded onPlastid; Chloroplast
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare) [Reference proteome]
Taxonomic identifier4558 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum

Protein attributes

Sequence length500 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol. HAMAP-Rule MF_00491

Subcellular location

Plastidchloroplast thylakoid membrane; Multi-pass membrane protein Potential HAMAP-Rule MF_00491.

Sequence similarities

Belongs to the complex I subunit 4 family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 500500NAD(P)H-quinone oxidoreductase chain 4, chloroplastic HAMAP-Rule MF_00491
PRO_0000275922

Regions

Transmembrane4 – 2421Helical; Potential
Transmembrane35 – 5521Helical; Potential
Transmembrane87 – 10721Helical; Potential
Transmembrane111 – 13121Helical; Potential
Transmembrane134 – 15421Helical; Potential
Transmembrane167 – 18721Helical; Potential
Transmembrane211 – 23121Helical; Potential
Transmembrane242 – 26221Helical; Potential
Transmembrane272 – 29221Helical; Potential
Transmembrane313 – 33321Helical; Potential
Transmembrane334 – 35421Helical; Potential
Transmembrane386 – 40621Helical; Potential
Transmembrane417 – 43721Helical; Potential
Transmembrane462 – 48221Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
A1E9X4 [UniParc].

Last modified January 23, 2007. Version 1.
Checksum: E6C0F322543BA6B2

FASTA50056,360
        10         20         30         40         50         60 
MSYFPWLTIL VVLPIFAGSL IFFLPHKGNK IVRWYTIAIC LLEFLIMTYA FCYHFQLEDP 

        70         80         90        100        110        120 
LIQLKEDSKW IDVFDFHWRL GIDGLSLGSI LLTGFITTLA TLAAWPVTRN SQLFYFLMLA 

       130        140        150        160        170        180 
MYSGQIGLFS SRDLLLFFIM WELELIPVYL LLSMWGGKRR LYSATKFILY TAGGSIFFLI 

       190        200        210        220        230        240 
GVLGMGLYGS NEPGLDLERL INQSYPTTLE ILLYFGFLIA YAVKLPIIPL HTWLPDTHGE 

       250        260        270        280        290        300 
AHYSTCMLLA GILLKMGAYG LIRVNMELLP HAHYLFSPWL VIIGAVQIIY AASTSLGQRN 

       310        320        330        340        350        360 
FKKRIAYSSV SHMGFIIIGI GSITNIGLNG AILQILSHGF IGATLFFLAG TACDRMRLVY 

       370        380        390        400        410        420 
LEELGGISIP MPKIFTMFSS FSMASLALPG MSGFVAELVV FFGLITSPKF MLMPKMLITF 

       430        440        450        460        470        480 
VMAIGMILTP IYLLSMLRQM FYGYKLFHVP NKNFVDSGPR ELFLLICIFL PVIGIGIYPD 

       490        500 
FVLSLSVDRV EALLSNYYTK 

« Hide

References

[1]"Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes."
Saski C., Lee S.-B., Fjellheim S., Guda C., Jansen R.K., Luo H., Tomkins J., Rognli O.A., Daniell H., Clarke J.L.
Theor. Appl. Genet. 115:571-590(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. BTx623.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
EF115542 Genomic DNA. Translation: ABK79546.1.
RefSeqYP_899457.1. NC_008602.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING4558.Sb03g020185.1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4549152.
KEGGsbi:SobiCp073.

Organism-specific databases

GrameneA1E9X4.

Phylogenomic databases

eggNOGCOG1008.
KOK05575.
ProtClustDBCHL00011.

Family and domain databases

HAMAPMF_00491. NDH1_NuoM.
InterProIPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR003918. NADH_UbQ_OxRdtase.
[Graphical view]
PfamPF00361. Oxidored_q1. 1 hit.
[Graphical view]
PRINTSPR01437. NUOXDRDTASE4.
TIGRFAMsTIGR01972. NDH_I_M. 1 hit.
ProtoNetSearch...

Entry information

Entry nameNU4C_SORBI
AccessionPrimary (citable) accession number: A1E9X4
Entry history
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: January 23, 2007
Last modified: February 19, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families