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A1E9X4

- NU4C_SORBI

UniProt

A1E9X4 - NU4C_SORBI

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Protein
NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Gene
ndhD
Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.UniRule annotation

GO - Molecular functioni

  1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
  2. quinone binding Source: UniProtKB-KW

GO - Biological processi

  1. ATP synthesis coupled electron transport Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

NAD, NADP, Plastoquinone

Names & Taxonomyi

Protein namesi
Recommended name:
NAD(P)H-quinone oxidoreductase chain 4, chloroplastic (EC:1.6.5.-)
Alternative name(s):
NAD(P)H dehydrogenase, chain 4
NADH-plastoquinone oxidoreductase chain 4
Gene namesi
Name:ndhD
Encoded oniPlastid; Chloroplast
OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)
Taxonomic identifieri4558 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
ProteomesiUP000000768: Chloroplast

Organism-specific databases

GrameneiA1E9X4.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei4 – 2421Helical; Reviewed prediction
Add
BLAST
Transmembranei35 – 5521Helical; Reviewed prediction
Add
BLAST
Transmembranei87 – 10721Helical; Reviewed prediction
Add
BLAST
Transmembranei111 – 13121Helical; Reviewed prediction
Add
BLAST
Transmembranei134 – 15421Helical; Reviewed prediction
Add
BLAST
Transmembranei167 – 18721Helical; Reviewed prediction
Add
BLAST
Transmembranei211 – 23121Helical; Reviewed prediction
Add
BLAST
Transmembranei242 – 26221Helical; Reviewed prediction
Add
BLAST
Transmembranei272 – 29221Helical; Reviewed prediction
Add
BLAST
Transmembranei313 – 33321Helical; Reviewed prediction
Add
BLAST
Transmembranei334 – 35421Helical; Reviewed prediction
Add
BLAST
Transmembranei386 – 40621Helical; Reviewed prediction
Add
BLAST
Transmembranei417 – 43721Helical; Reviewed prediction
Add
BLAST
Transmembranei462 – 48221Helical; Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
  2. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 500500NAD(P)H-quinone oxidoreductase chain 4, chloroplasticUniRule annotation
PRO_0000275922Add
BLAST

Keywords - PTMi

Quinone

Interactioni

Protein-protein interaction databases

STRINGi4558.Sb03g020185.1.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG1008.
KOiK05575.

Family and domain databases

HAMAPiMF_00491. NDH1_NuoM.
InterProiIPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR003918. NADH_UbQ_OxRdtase.
[Graphical view]
PfamiPF00361. Oxidored_q1. 1 hit.
[Graphical view]
PRINTSiPR01437. NUOXDRDTASE4.
TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.

Sequencei

Sequence statusi: Complete.

A1E9X4-1 [UniParc]FASTAAdd to Basket

« Hide

MSYFPWLTIL VVLPIFAGSL IFFLPHKGNK IVRWYTIAIC LLEFLIMTYA    50
FCYHFQLEDP LIQLKEDSKW IDVFDFHWRL GIDGLSLGSI LLTGFITTLA 100
TLAAWPVTRN SQLFYFLMLA MYSGQIGLFS SRDLLLFFIM WELELIPVYL 150
LLSMWGGKRR LYSATKFILY TAGGSIFFLI GVLGMGLYGS NEPGLDLERL 200
INQSYPTTLE ILLYFGFLIA YAVKLPIIPL HTWLPDTHGE AHYSTCMLLA 250
GILLKMGAYG LIRVNMELLP HAHYLFSPWL VIIGAVQIIY AASTSLGQRN 300
FKKRIAYSSV SHMGFIIIGI GSITNIGLNG AILQILSHGF IGATLFFLAG 350
TACDRMRLVY LEELGGISIP MPKIFTMFSS FSMASLALPG MSGFVAELVV 400
FFGLITSPKF MLMPKMLITF VMAIGMILTP IYLLSMLRQM FYGYKLFHVP 450
NKNFVDSGPR ELFLLICIFL PVIGIGIYPD FVLSLSVDRV EALLSNYYTK 500
Length:500
Mass (Da):56,360
Last modified:January 23, 2007 - v1
Checksum:iE6C0F322543BA6B2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
EF115542 Genomic DNA. Translation: ABK79546.1.
RefSeqiYP_899457.1. NC_008602.1.

Genome annotation databases

GeneIDi4549152.
KEGGisbi:SobiCp073.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
EF115542 Genomic DNA. Translation: ABK79546.1 .
RefSeqi YP_899457.1. NC_008602.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 4558.Sb03g020185.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4549152.
KEGGi sbi:SobiCp073.

Organism-specific databases

Gramenei A1E9X4.

Phylogenomic databases

eggNOGi COG1008.
KOi K05575.

Family and domain databases

HAMAPi MF_00491. NDH1_NuoM.
InterProi IPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR003918. NADH_UbQ_OxRdtase.
[Graphical view ]
Pfami PF00361. Oxidored_q1. 1 hit.
[Graphical view ]
PRINTSi PR01437. NUOXDRDTASE4.
TIGRFAMsi TIGR01972. NDH_I_M. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes."
    Saski C., Lee S.-B., Fjellheim S., Guda C., Jansen R.K., Luo H., Tomkins J., Rognli O.A., Daniell H., Clarke J.L.
    Theor. Appl. Genet. 115:571-590(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. BTx623.

Entry informationi

Entry nameiNU4C_SORBI
AccessioniPrimary (citable) accession number: A1E9X4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: January 23, 2007
Last modified: May 14, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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