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A1E9X4

- NU4C_SORBI

UniProt

A1E9X4 - NU4C_SORBI

Protein

NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

Gene

ndhD

Organism
Sorghum bicolor (Sorghum) (Sorghum vulgare)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.UniRule annotation

    GO - Molecular functioni

    1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
    2. quinone binding Source: UniProtKB-KW

    GO - Biological processi

    1. ATP synthesis coupled electron transport Source: InterPro

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Ligandi

    NAD, NADP, Plastoquinone

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    NAD(P)H-quinone oxidoreductase chain 4, chloroplasticUniRule annotation (EC:1.6.5.-UniRule annotation)
    Alternative name(s):
    NAD(P)H dehydrogenase, chain 4UniRule annotation
    NADH-plastoquinone oxidoreductase chain 4UniRule annotation
    Gene namesi
    Name:ndhDUniRule annotation
    Encoded oniPlastid; Chloroplast
    OrganismiSorghum bicolor (Sorghum) (Sorghum vulgare)
    Taxonomic identifieri4558 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeSorghum
    ProteomesiUP000000768: Chloroplast

    Organism-specific databases

    GrameneiA1E9X4.

    Subcellular locationi

    Plastidchloroplast thylakoid membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

    GO - Cellular componenti

    1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
    2. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Chloroplast, Membrane, Plastid, Thylakoid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 500500NAD(P)H-quinone oxidoreductase chain 4, chloroplasticPRO_0000275922Add
    BLAST

    Keywords - PTMi

    Quinone

    Interactioni

    Protein-protein interaction databases

    STRINGi4558.Sb03g020185.1.

    Structurei

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei4 – 2421HelicalUniRule annotationAdd
    BLAST
    Transmembranei35 – 5521HelicalUniRule annotationAdd
    BLAST
    Transmembranei87 – 10721HelicalUniRule annotationAdd
    BLAST
    Transmembranei111 – 13121HelicalUniRule annotationAdd
    BLAST
    Transmembranei134 – 15421HelicalUniRule annotationAdd
    BLAST
    Transmembranei167 – 18721HelicalUniRule annotationAdd
    BLAST
    Transmembranei211 – 23121HelicalUniRule annotationAdd
    BLAST
    Transmembranei242 – 26221HelicalUniRule annotationAdd
    BLAST
    Transmembranei272 – 29221HelicalUniRule annotationAdd
    BLAST
    Transmembranei313 – 33321HelicalUniRule annotationAdd
    BLAST
    Transmembranei334 – 35421HelicalUniRule annotationAdd
    BLAST
    Transmembranei386 – 40621HelicalUniRule annotationAdd
    BLAST
    Transmembranei417 – 43721HelicalUniRule annotationAdd
    BLAST
    Transmembranei462 – 48221HelicalUniRule annotationAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the complex I subunit 4 family.UniRule annotation

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiCOG1008.
    KOiK05575.

    Family and domain databases

    HAMAPiMF_00491. NDH1_NuoM.
    InterProiIPR022997. NADH_Q_OxRdtase_chain4.
    IPR010227. NADH_Q_OxRdtase_chainM/4.
    IPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR003918. NADH_UbQ_OxRdtase.
    [Graphical view]
    PfamiPF00361. Oxidored_q1. 1 hit.
    [Graphical view]
    PRINTSiPR01437. NUOXDRDTASE4.
    TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A1E9X4-1 [UniParc]FASTAAdd to Basket

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    MSYFPWLTIL VVLPIFAGSL IFFLPHKGNK IVRWYTIAIC LLEFLIMTYA    50
    FCYHFQLEDP LIQLKEDSKW IDVFDFHWRL GIDGLSLGSI LLTGFITTLA 100
    TLAAWPVTRN SQLFYFLMLA MYSGQIGLFS SRDLLLFFIM WELELIPVYL 150
    LLSMWGGKRR LYSATKFILY TAGGSIFFLI GVLGMGLYGS NEPGLDLERL 200
    INQSYPTTLE ILLYFGFLIA YAVKLPIIPL HTWLPDTHGE AHYSTCMLLA 250
    GILLKMGAYG LIRVNMELLP HAHYLFSPWL VIIGAVQIIY AASTSLGQRN 300
    FKKRIAYSSV SHMGFIIIGI GSITNIGLNG AILQILSHGF IGATLFFLAG 350
    TACDRMRLVY LEELGGISIP MPKIFTMFSS FSMASLALPG MSGFVAELVV 400
    FFGLITSPKF MLMPKMLITF VMAIGMILTP IYLLSMLRQM FYGYKLFHVP 450
    NKNFVDSGPR ELFLLICIFL PVIGIGIYPD FVLSLSVDRV EALLSNYYTK 500
    Length:500
    Mass (Da):56,360
    Last modified:January 23, 2007 - v1
    Checksum:iE6C0F322543BA6B2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF115542 Genomic DNA. Translation: ABK79546.1.
    RefSeqiYP_899457.1. NC_008602.1.

    Genome annotation databases

    GeneIDi4549152.
    KEGGisbi:SobiCp073.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF115542 Genomic DNA. Translation: ABK79546.1 .
    RefSeqi YP_899457.1. NC_008602.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 4558.Sb03g020185.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4549152.
    KEGGi sbi:SobiCp073.

    Organism-specific databases

    Gramenei A1E9X4.

    Phylogenomic databases

    eggNOGi COG1008.
    KOi K05575.

    Family and domain databases

    HAMAPi MF_00491. NDH1_NuoM.
    InterProi IPR022997. NADH_Q_OxRdtase_chain4.
    IPR010227. NADH_Q_OxRdtase_chainM/4.
    IPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR003918. NADH_UbQ_OxRdtase.
    [Graphical view ]
    Pfami PF00361. Oxidored_q1. 1 hit.
    [Graphical view ]
    PRINTSi PR01437. NUOXDRDTASE4.
    TIGRFAMsi TIGR01972. NDH_I_M. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes."
      Saski C., Lee S.-B., Fjellheim S., Guda C., Jansen R.K., Luo H., Tomkins J., Rognli O.A., Daniell H., Clarke J.L.
      Theor. Appl. Genet. 115:571-590(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. BTx623.

    Entry informationi

    Entry nameiNU4C_SORBI
    AccessioniPrimary (citable) accession number: A1E9X4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 6, 2007
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3