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Protein

Probable rhamnogalacturonase B

Gene

rhgB

Organism
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (Aspergillus fischerianus)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Pectinolytic enzymes consist of four classes of enzymes: pectine lyase, polygalacturonase, pectin methylesterase and rhamnogalacturonase. Hydrolyzes alpha-D-galacturonopyranosyl-(1,2)-alpha-L-rhamnopyranosyl linkages in the backbone of the hairy regions of pectins (By similarity).By similarity

Catalytic activityi

Endohydrolysis of alpha-D-GalA-(1->2)-alpha-L-Rha glycosidic bond in the rhamnogalacturonan I backbone with initial inversion of anomeric configuration releasing oligosaccharides with beta-D-GalA at the reducing end.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei219 – 2191Proton donorBy similarity
Active sitei294 – 2941By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Cell wall biogenesis/degradation, Polysaccharide degradation

Names & Taxonomyi

Protein namesi
Recommended name:
Probable rhamnogalacturonase B (EC:3.2.1.171)
Short name:
RGase B
Short name:
RHG B
Gene namesi
Name:rhgB
ORF Names:NFIA_076680
OrganismiNeosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (Aspergillus fischerianus)
Taxonomic identifieri331117 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaEurotiomycetesEurotiomycetidaeEurotialesAspergillaceaeNeosartorya
Proteomesi
  • UP000006702 Componenti: Unassembled WGS sequence

Organism-specific databases

EuPathDBiFungiDB:NFIA_076680.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence analysisAdd
BLAST
Chaini22 – 516495Probable rhamnogalacturonase BPRO_0000394391Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi42 ↔ 68By similarity
Glycosylationi145 – 1451N-linked (GlcNAc...)Sequence analysis
Disulfide bondi221 ↔ 238By similarity
Glycosylationi239 – 2391N-linked (GlcNAc...)Sequence analysis
Glycosylationi321 – 3211N-linked (GlcNAc...)Sequence analysis
Disulfide bondi344 ↔ 350By similarity
Disulfide bondi372 ↔ 381By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein

Structurei

3D structure databases

ProteinModelPortaliA1DED1.
SMRiA1DED1. Positions 23-443.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 28 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000217527.
KOiK18580.
OMAiAWALQID.
OrthoDBiEOG78H43F.

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR000743. Glyco_hydro_28.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00295. Glyco_hydro_28. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A1DED1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLHAFTLLS LLGLVPSFAA ASLSGSVGPL TSASAKAAKK TCNVLDYGAK
60 70 80 90 100
ADKKTDLGPP LAAAFAACKS GGLVYIPAGN YAMSTWVKLA NGKAWALQID
110 120 130 140 150
GVIYRTGTDG GNMIMIEHTS DFELYSSTSS GAMQGLGYEL HAANNWSGPR
160 170 180 190 200
LLRLWDVSDF SVHDLILVDS PSFHFSIDTC SNGEVYNMAI RGGNHGGLDG
210 220 230 240 250
VDVWSTNIWI HDVEVTNKDE CVTVKSPAKN ILVENIYCNL SGGCGMGSLG
260 270 280 290 300
ADTDISDITY KNIYTWNSNQ MMMIKSNGGS GTVSNVVLEN FIGHGNAYSL
310 320 330 340 350
DIDSYWSSMS AVSGDGVELS NITIKNWKGT EANGAQRGPI KIICPDKVPC
360 370 380 390 400
YNILIEDFAM WTETGSKQWY SCQSAYGSGF CLKSGSHHTS YAVTTTTVSS
410 420 430 440 450
APSGYSAAKM PLDLSTDFGS TQSIPIPTIP TSFYPGATPY SALMSKQSTK
460 470 480 490 500
AAKARAVDMS VETPAAASRS EQVVQGASQE TSQPAPESAG PVRSVPTGGN
510
RPSRHRHGHH HFWIAA
Length:516
Mass (Da):54,800
Last modified:January 23, 2007 - v1
Checksum:i01E6F33055552D6D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS027696 Genomic DNA. Translation: EAW17738.1.
RefSeqiXP_001259635.1. XM_001259634.1.

Genome annotation databases

EnsemblFungiiCADNFIAT00007735; CADNFIAP00007568; CADNFIAG00007735.
GeneIDi4585997.
KEGGinfi:NFIA_076680.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS027696 Genomic DNA. Translation: EAW17738.1.
RefSeqiXP_001259635.1. XM_001259634.1.

3D structure databases

ProteinModelPortaliA1DED1.
SMRiA1DED1. Positions 23-443.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiCADNFIAT00007735; CADNFIAP00007568; CADNFIAG00007735.
GeneIDi4585997.
KEGGinfi:NFIA_076680.

Organism-specific databases

EuPathDBiFungiDB:NFIA_076680.

Phylogenomic databases

HOGENOMiHOG000217527.
KOiK18580.
OMAiAWALQID.
OrthoDBiEOG78H43F.

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR000743. Glyco_hydro_28.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00295. Glyco_hydro_28. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181.

Entry informationi

Entry nameiRHGB_NEOFI
AccessioniPrimary (citable) accession number: A1DED1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 18, 2010
Last sequence update: January 23, 2007
Last modified: May 11, 2016
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.