A1B8W9 (A1B8W9_PARDP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Deoxyribose-phosphate aldolase EMBL ABL71963.1
EC=4.1.2.4 EMBL ABL71963.1

Gene names

Ordered Locus Names:

Pden_3897 EMBL ABL71963.1

Organism

Paracoccus denitrificans (strain Pd 1222) [Complete proteome] [HAMAP] EMBL ABL71963.1

Taxonomic identifier

318586 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Paracoccus › Paracoccus denitrificans

Protein attributes

Sequence length	314 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. SAAS SAAS011343
Catalytic activity	2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. SAAS SAAS011343
Pathway	Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. SAAS SAAS011343
Subcellular location	Cytoplasm By similarity SAAS SAAS011343.

Ontologies

Keywords
Cellular component	Cytoplasm SAAS SAAS011343
Ligand	Schiff base SAAS SAAS011343
Molecular function	Lyase SAAS SAAS011343 EMBL ABL71963.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	deoxyribonucleotide catabolic process Inferred from electronic annotation. Source: InterPro deoxyribose phosphate catabolic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	deoxyribose-phosphate aldolase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1B8W9 [UniParc]. Last modified January 23, 2007. Version 1. Checksum: 45D167F10548563E	FASTA	314	34,073
	10 20 30 40 50 60 MERKNPGTDF RLDWFENIQV NTPAAERRAT SLAARRSLKK EWQAAWLLNA VRCIDLTTLS 70 80 90 100 110 120 GDDTPDRVAR LCAKARQPVD AGQLAALGVE HLTTGAVCVY PTMVAAAKRA LRGTAIPVAS 130 140 150 160 170 180 VATGFPAGLM PLDLRLAEIR YALDQGADEI DIVISRALVL RGEWAALYDE ICEMREACGS 190 200 210 220 230 240 ARMKAILATG ELKTLTNVAR ASHVAMQAGA DFIKTSTGKE PVNATLPVSL VMLRAIRDYR 250 260 270 280 290 300 DQTGFAVGFK PAGGLRTAKD ALNWQVLMAE ELGRDWLRPD LFRIGASSLL ADIERQISHH 310 VTGRYAGAHR LAAG

References

[1]

"Complete sequence of chromosome 2 of Paracoccus denitrificans PD1222." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Spiro S., Richardson D.J., Moir J.W.B., Ferguson S.J., van Spanning R.J.M., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Pd 1222.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000490 Genomic DNA. Translation: ABL71963.1.
RefSeq	YP_917659.1. NC_008687.1.
3D structure databases
ProteinModelPortal	A1B8W9.
ModBase	Search...
Protein-protein interaction databases
STRING	318586.Pden_3897.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABL71963; ABL71963; Pden_3897.
GeneID	4582448.
KEGG	pde:Pden_3897.
PATRIC	22858942. VBIParDen97112_3826.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0274.
HOGENOM	HOG000241644.
KO	K01619.
OMA	MVIDRGA.
ProtClustDB	CLSK864118.
Enzyme and pathway databases
UniPathway	UPA00002; UER00468.
Family and domain databases
Gene3D	3.20.20.70. 1 hit.
InterPro	IPR013785. Aldolase_TIM. IPR011343. DeoC. IPR002915. DeoC/FbaB/lacD_aldolase. [Graphical view]
PANTHER	PTHR10889. PTHR10889. 1 hit.
Pfam	PF01791. DeoC. 1 hit. [Graphical view]
PIRSF	PIRSF001357. DeoC. 1 hit.
TIGRFAMs	TIGR00126. deoC. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A1B8W9_PARDP

Accession

Primary (citable) accession number: A1B8W9

Entry history

Integrated into UniProtKB/TrEMBL:	January 23, 2007
Last sequence update:	January 23, 2007
Last modified:	May 1, 2013
This is version 54 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)