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A1B5L3 (A1B5L3_PARDP) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Selenide, water dikinase HAMAP MF_00625
EC=2.7.9.3 HAMAP MF_00625
Alternative name(s):
Selenium donor protein HAMAP MF_00625
Selenophosphate synthase HAMAP MF_00625
Gene names
Name:selD HAMAP MF_00625
Ordered Locus Names:Pden_2723
OrganismParacoccus denitrificans (strain Pd 1222) [Complete proteome] [HAMAP] EMBL ABL70807.1
Taxonomic identifier318586 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Paracoccus

Protein attributes

Sequence length347 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Synthesizes selenophosphate from selenide and ATP By similarity. HAMAP MF_00625 SAAS SAAS023061

Catalytic activity

ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625 SAAS SAAS023061

Cofactor

Magnesium By similarity. HAMAP MF_00625 SAAS SAAS023061

Sequence similarities

Belongs to the selenophosphate synthase 1 family. Class I subfamily. HAMAP MF_00625

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding229 – 2357ATP By similarity HAMAP MF_00625

Sites

Active site161 By similarity HAMAP MF_00625
Site191Important for catalytic activity By similarity HAMAP MF_00625

Sequences

Sequence LengthMass (Da)Tools
A1B5L3 [UniParc].

Last modified January 23, 2007. Version 1.
Checksum: 6D3A899C5DB9F3E1

FASTA34736,100
        10         20         30         40         50         60 
MNDLPRLTSL AHGGGCGCKL APSVLRELLA DQPMAQAFPQ LLVGTETSDD AAVWQVDDNT 

        70         80         90        100        110        120 
CVIATTDFFM PMVDDPRAFG RIAATNAISD IYAMGGRPIM ALAILGMPID KLAPERIREI 

       130        140        150        160        170        180 
LEGGREICHQ AGIPVAGGHS IDAPEPIYGL AVIGLCHPSE LRRNADARPG DALILTKGLG 

       190        200        210        220        230        240 
VGIYSAAIKK GALDEAGVAE MVASATTLNR VGADLAKRAD VHAITDVTGF GILGHGLEIA 

       250        260        270        280        290        300 
RGARLRLRLR LTDLPLLSRA AELAEAGFVT GASTRNWAAY GAEVALPEGL PLWQRALLTD 

       310        320        330        340 
PQTSGGLLVA CAPEAAGEVL DFIRDAGFPL AAIVGHAEQG VAGISVE

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References

[1]"Complete sequence of chromosome 1 of Paracoccus denitrificans PD1222."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Spiro S., Richardson D.J., Moir J.W.B., Ferguson S.J., van Spanning R.J.M., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000489 Genomic DNA. Translation: ABL70807.1.
RefSeqYP_916503.1. NC_008686.1.

3D structure databases

ProteinModelPortalA1B5L3.
ModBaseSearch...

Protein-protein interaction databases

STRINGA1B5L3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4580358.
GenomeReviewsGene locus Pden_2723 in contig CP000489_GR.
KEGGpde:Pden_2723.
PATRIC22856589. VBIParDen97112_2660.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0709.
HOGENOMHBG383791.
OMAMMAIAIL.
PhylomeDBA1B5L3.
ProtClustDBPRK00943.

Family and domain databases

HAMAPMF_00625. SelD.
[Tree]
InterProIPR000728. AIR_synth.
IPR010918. AIR_synth_C.
IPR016188. PurM_N-like.
IPR004536. SelD.
IPR023061. SelD_I.
[Graphical view]
KOK01008.
PfamPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMSSF56042. AIR_synth_C. 1 hit.
SSF55326. PurM_N-like. 1 hit.
TIGRFAMsTIGR00476. SelD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA1B5L3_PARDP
AccessionPrimary (citable) accession number: A1B5L3
Entry history
Integrated into UniProtKB/TrEMBL: January 23, 2007
Last sequence update: January 23, 2007
Last modified: December 14, 2011
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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