A1B339 (A1B339_PARDP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA topoisomerase IV subunit B EMBL ABL69933.1
EC=5.99.1.3 EMBL ABL69933.1

Gene names

Ordered Locus Names:

Pden_1836

Organism

Paracoccus denitrificans (strain Pd 1222) [Complete proteome] [HAMAP] EMBL ABL69933.1

Taxonomic identifier

318586 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Paracoccus

Protein attributes

Sequence length	656 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding SAAS SAAS002288 RuleBase RU000380 Nucleotide-binding
Molecular function	Isomerase Topoisomerase RuleBase RU000380 SAAS SAAS002288
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1B339 [UniParc]. Last modified January 23, 2007. Version 1. Checksum: 6692B032AE980CB5	FASTA	656	71,959
	10 20 30 40 50 60 MADDLFPAAD KASESYSASS IEVLEGLEPV RKRPGMYIGG TDERALHHLV AEILDNSMDE 70 80 90 100 110 120 AVAGHASRIE VELLADFSVV IRDNGRGIPI DPHPKFPGKS ALEVILCTLH AGGKFSGDVY 130 140 150 160 170 180 QTSGGLHGVG ASVVNALSDS MVVQVARNRE LYEQCFSRGL PLGPVEKVGA APNRRGTTVT 190 200 210 220 230 240 FHADEQIFGH HRFKPARLLR MVKSKAYLFS GVEIRWKSEI DDGETPLEAT FHFPGGLADY 250 260 270 280 290 300 LGEVLGNAST YADRPFAGSV DFKEKFNTPG KVDWAINWTP SRDGFIQSYC NTVPTPEGGT 310 320 330 340 350 360 HEAGFWSAIL RGIRAYGERV SNKKAAQITR DDLLAGGCAL VSCFIREPEF VGQTKDRLAT 370 380 390 400 410 420 TEAQRLVEGA VRDHFDNWLA ADTKSAGAIL DFLVLRAEER LRRRQEKETA RKSATKKLRL 430 440 450 460 470 480 PGKLVDCSAT NREGTELFIV EGDSAGGSAK MARERTTQAL LPLRGKILNV LGAASSKLGS 490 500 510 520 530 540 NQEIADLCQA LGVGMGSRFN VDDLRYDKII IMTDADVDGA HIASLLMTFF FTQMRPLIDK 550 560 570 580 590 600 GHLYLACPPL YRLTQGPHRI YVADDAEKES WLAKGLGGKG KIDVQRFKGL GEMDAKDLKD 610 620 630 640 650 TTMNPRTRKL IRVSIDEEEG GETGDLVERL MGKKPELRFQ FIQENAQFAD AEELDV

References

[1]

"Complete sequence of chromosome 1 of Paracoccus denitrificans PD1222." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Spiro S., Richardson D.J., Moir J.W.B., Ferguson S.J., van Spanning R.J.M., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000489 Genomic DNA. Translation: ABL69933.1.
RefSeq	YP_915629.1. NC_008686.1.
3D structure databases
ProteinModelPortal	A1B339.
ModBase	Search...
Protein-protein interaction databases
STRING	A1B339.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4581020.
GenomeReviews	Gene locus Pden_1836 in contig CP000489_GR.
KEGG	pde:Pden_1836.
PATRIC	22854775. VBIParDen97112_1770.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0187.
HOGENOM	HBG304889.
OMA	QARDKEF.
PhylomeDB	A1B339.
ProtClustDB	PRK05559.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A1B339_PARDP

Accession

Primary (citable) accession number: A1B339

Entry history

Integrated into UniProtKB/TrEMBL:	January 23, 2007
Last sequence update:	January 23, 2007
Last modified:	January 25, 2012
This is version 37 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)