A1B198 (A1B198_PARDP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein EMBL ABL69292.1

Gene names

Ordered Locus Names:

Pden_1187 EMBL ABL69292.1

Organism

Paracoccus denitrificans (strain Pd 1222) [Complete proteome] [HAMAP] EMBL ABL69292.1

Taxonomic identifier

318586 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Paracoccus › Paracoccus denitrificans

Protein attributes

Sequence length	369 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	Metal-binding SAAS SAAS013342
Technical term	3D-structure PDB 4E8G PDB 4IZG PDB 4J1O Complete proteome
Gene Ontology (GO)
Molecular_function	catalytic activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1B198 [UniParc]. Last modified January 23, 2007. Version 1. Checksum: 31E3E18DBDF60A5A	FASTA	369	39,382
	10 20 30 40 50 60 MKIAEIHVYA HDLPVKDGPY TIASSTVWSL QTTLVKIVAD SGLAGWGETC PVGPTYAPSH 70 80 90 100 110 120 ALGARAALAE MAPGLIGANP LQPLVLRRRM DGLLCGHNYA KAAIDIAAYD LMGKHYGVRV 130 140 150 160 170 180 ADLLGGVAAE RVPSYYATGI GQPDEIARIA AEKVAEGFPR LQIKIGGRPV EIDIETVRKV 190 200 210 220 230 240 WERIRGTGTR LAVDGNRSLP SRDALRLSRE CPEIPFVLEQ PCNTLEEIAA IRGRVQHGIY 250 260 270 280 290 300 LDESGEDLST VIRAAGQGLC DGFGMKLTRI GGLQQMAAFR DICEARALPH SCDDAWGGDI 310 320 330 340 350 360 IAAACTHIGA TVQPRLNEGV WVAQPYIAQP YDEENGIRIA GGHIDLPKGP GLGITPDESL FGPPVASFS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of chromosome 1 of Paracoccus denitrificans PD1222." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Spiro S., Richardson D.J., Moir J.W.B., Ferguson S.J., van Spanning R.J.M., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Pd 1222.
[2]	"Crystal structure of an enolase (mandelate racemase subgroup) from paracococus denitrificans pd1222 (target nysgrc-012907) with bound mg." New York Structural Genomics Research Consortium (NYSGRC) Vetting M.W., Toro R., Bhosle R., Wasserman S.R., Morisco L.L., Sojitra S., Chamala S., Kar A., Lafleur J., Villigas G., Evans B., Hammonds J., Gizzi A., Zencheck W.D., Hillerich B., Love J., Seidel R.D., Bonanno J.B., Gerlt J.A., Almo S.C. Submitted (MAR-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS).
[3]	"Crystal structure of an enolase (mandelate racemase subgroup) from paracococus denitrificans pd1222 (target nysgrc-012907) with bound cis-4oh-d-proline betaine (product)." New York Structural Genomics Research Consortium (NYSGRC) Vetting M.W., Toro R., Bhosle R., Wasserman S.R., Morisco L.L., Sojitra S., Chamala S., Kar A., LaFleur J., Villigas G., Evans B., Hammonds J., Gizzi A., Stead M., Hillerich B., Love J., Seidel R.D., Bonanno J.B., Gerlt J.A., Almo S.C. Submitted (JAN-2013) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.70 ANGSTROMS).
[4]	"Crystal structure of an enolase (mandelate racemase subgroup) from paracococus denitrificans pd1222 (target nysgrc-012907) with bound l-proline betaine (substrate)." New York Structural Genomics Research Consortium (NYSGRC) Vetting M.W., Toro R., Bhosle R., Wasserman S.R., Morisco L.L., Sojitra S., Chamala S., Kar A., LaFleur J., Villigas G., Evans B., Hammonds J., Gizzi A., Stead M., Hillerich B., Love J., Seidel R.D., Bonanno J.B., Gerlt J.A., Almo S.C. Submitted (FEB-2013) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000489 Genomic DNA. Translation: ABL69292.1.

RefSeq

YP_914988.1. NC_008686.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
4E8G	X-ray	2.00	A/B	1-369	[»]
4IZG	X-ray	1.70	A/B	1-369	[»]
4J1O	X-ray	1.60	A/B	1-369	[»]

ProteinModelPortal

A1B198.

SMR

A1B198. Positions 2-367.

ModBase

Search...

Protein-protein interaction databases

STRING

318586.Pden_1187.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

ABL69292; ABL69292; Pden_1187.

GeneID

4580070.

KEGG

pde:Pden_1187.

PATRIC

22853539. VBIParDen97112_1164.

Organism-specific databases

CMR

Search...

Phylogenomic databases

eggNOG

COG4948.

HOGENOM

HOG000140215.

OMA

GETCPVG.

ProtClustDB

CLSK544228.

Family and domain databases

InterPro

IPR013342. Mandelate_racemase_C.
IPR013341. Mandelate_racemase_N.
IPR001354. MR_MLE.
[Graphical view]

PANTHER

PTHR13794. PTHR13794. 1 hit.

Pfam

PF01188. MR_MLE. 1 hit.
PF02746. MR_MLE_N. 1 hit.
[Graphical view]

SMART

SM00922. MR_MLE. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

A1B198_PARDP

Accession

Primary (citable) accession number: A1B198

Entry history

Integrated into UniProtKB/TrEMBL:	January 23, 2007
Last sequence update:	January 23, 2007
Last modified:	May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)