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A1B072 (DADA_PARDP) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
D-amino acid dehydrogenase small subunit
EC=1.4.99.1
Gene names
Name:dadA
Ordered Locus Names:Pden_0804
OrganismParacoccus denitrificans (strain Pd 1222) [Complete proteome] [HAMAP]
Taxonomic identifier318586 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Paracoccus

Protein attributes

Sequence length433 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Oxidative deamination of D-amino acids By similarity. HAMAP MF_01202

Catalytic activity

A D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. HAMAP MF_01202

Cofactor

FAD By similarity. HAMAP MF_01202

Pathway

Amino-acid degradation; D-alanine degradation; NH(3) and pyruvate from D-alanine: step 1/1. HAMAP MF_01202

Subunit structure

Heterodimer of a small and a large subunit By similarity.

Sequence similarities

Belongs to the DadA oxidoreductase family.

Ontologies

Keywords
   LigandFAD
Flavoprotein
   Molecular functionOxidoreductase
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular functionD-amino-acid dehydrogenase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 433433D-amino acid dehydrogenase small subunit HAMAP MF_01202
PRO_1000066103

Regions

Nucleotide binding3 – 1715FAD Potential

Sequences

Sequence LengthMass (Da)Tools
A1B072 [UniParc].

Last modified January 23, 2007. Version 1.
Checksum: 292430F16B30C451

FASTA43346,754
        10         20         30         40         50         60 
MKIVVLGAGV LGVTSAWYLA KAGHEVTVID RQEGPALETS FANAGEISPG YSSPWAAPGV 

        70         80         90        100        110        120 
PLKALKWMFQ RHAPLVVQPR LDWQRVSWMA RMLANCTSSA YAVNKSRMVR LAEYSRDCLG 

       130        140        150        160        170        180 
ELRAETGIRY DERTQGTLQV FRKQQQLDAA GKDIEVLRAD GVPFEVLDRD GCVAAEPGLA 

       190        200        210        220        230        240 
GSAERIVGGL RLPGDETGDC FLFTNRLAEM ATEAGVTFRW GVSIEALEAE GGRISAVRTD 

       250        260        270        280        290        300 
KGRLTADRYV LAMGSYSPRM VRHLGLKLPV YPLKGYSLTI DIQDESRAPV STVMDETYKV 

       310        320        330        340        350        360 
AITRLGDRIR VGGLAEIAGY DLSLNPRRKE TLAKSVGELF GGAGDAEQAL FWTGLRPMTP 

       370        380        390        400        410        420 
DGTPIVGATP IPNLYLNTGH GTLGWTMSAG SGRLIADLIS GRKPDIAAED LGYARYMRGA 

       430 
KAAGRPALQP ARA

« Hide

References

[1]"Complete sequence of chromosome 1 of Paracoccus denitrificans PD1222."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Spiro S., Richardson D.J., Moir J.W.B., Ferguson S.J., van Spanning R.J.M., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Pd 1222.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000489 Genomic DNA. Translation: ABL68916.1.
RefSeqYP_914612.1. NC_008686.1.

3D structure databases

ProteinModelPortalA1B072.
ModBaseSearch...

Protein-protein interaction databases

STRINGA1B072.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4580628.
GenomeReviewsGene locus Pden_0804 in contig CP000489_GR.
KEGGpde:Pden_0804.
PATRIC22852766. VBIParDen97112_0782.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0665.
HOGENOMHBG729204.
OMALEHAGGQ.
PhylomeDBA1B072.
ProtClustDBPRK00711.

Family and domain databases

HAMAPMF_01202. DadA.
[Tree]
InterProIPR023080. D-aa_DH_ssu_DadA.
IPR006076. FAD-dep_OxRdtase.
[Graphical view]
KOK00285.
PfamPF01266. DAO. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameDADA_PARDP
AccessionPrimary (citable) accession number: A1B072
Entry history
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: January 23, 2007
Last modified: December 14, 2011
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

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