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A1B058

- A1B058_PARDP

UniProt

A1B058 - A1B058_PARDP

Protein

Pseudouridine synthase

Gene

Pden_0790

Organism
Paracoccus denitrificans (strain Pd 1222)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 49 (01 Oct 2014)
      Sequence version 1 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. pseudouridine synthase activity Source: InterPro
    2. RNA binding Source: InterPro

    GO - Biological processi

    1. pseudouridine synthesis Source: InterPro

    Keywords - Molecular functioni

    IsomeraseUniRule annotationImported

    Enzyme and pathway databases

    BioCyciPDEN318586:GCVQ-802-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
    Gene namesi
    Ordered Locus Names:Pden_0790Imported
    OrganismiParacoccus denitrificans (strain Pd 1222)Imported
    Taxonomic identifieri318586 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeParacoccus
    ProteomesiUP000000361: Chromosome 1

    Interactioni

    Protein-protein interaction databases

    STRINGi318586.Pden_0790.

    Structurei

    3D structure databases

    ProteinModelPortaliA1B058.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the pseudouridine synthase rluA family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0564.
    HOGENOMiHOG000275914.
    KOiK06179.
    OMAiLNYKGAD.
    OrthoDBiEOG6P070X.

    Family and domain databases

    Gene3Di3.10.290.10. 1 hit.
    InterProiIPR020103. PsdUridine_synth_cat_dom.
    IPR006225. PsdUridine_synth_RluC/D.
    IPR006224. PsdUridine_synth_RluC/D_CS.
    IPR006145. PsdUridine_synth_RsuA/RluD.
    IPR002942. S4_RNA-bd.
    [Graphical view]
    PfamiPF00849. PseudoU_synth_2. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view]
    SMARTiSM00363. S4. 1 hit.
    [Graphical view]
    SUPFAMiSSF55120. SSF55120. 1 hit.
    TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
    PROSITEiPS01129. PSI_RLU. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A1B058-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSGVQTIRVG EDEGEQRIDR WLKKRFPQLT QGAVEKMCRT GQLRVDGGRV    50
    KANTRIEPGQ EVRVPPLPEG APPPAAPKAS VKQSDAEMIQ SCVLWRDEHI 100
    IALNKPPGLP SQGGSGQGDR HVDGLTTALM FGYKDRPKLV HRLDKDTSGV 150
    LLLARTDRIA RALSEAFRHR LTRKIYWAAV AGVPHPRMGS IKYGLVKAPG 200
    RGRGGEGEKM MAVHPSAVAA TEGAKRAHTD YAVLDALGGR VSWVAMVPVT 250
    GRTHQLRAHM AEIGHPIVGD GKYGGSGQEN LGDGWGAQLG GEISRKLHLH 300
    ARMIRFEHPI TKKLITVTAP LPEHMSRTWK TLGWSENDVP EDPFAETA 348
    Length:348
    Mass (Da):37,956
    Last modified:January 23, 2007 - v1
    Checksum:iC983BEBDC9AF8C34
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000489 Genomic DNA. Translation: ABL68902.1.
    RefSeqiWP_011747130.1. NC_008686.1.
    YP_914598.1. NC_008686.1.

    Genome annotation databases

    EnsemblBacteriaiABL68902; ABL68902; Pden_0790.
    GeneIDi4580614.
    KEGGipde:Pden_0790.
    PATRICi22852734. VBIParDen97112_0766.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000489 Genomic DNA. Translation: ABL68902.1 .
    RefSeqi WP_011747130.1. NC_008686.1.
    YP_914598.1. NC_008686.1.

    3D structure databases

    ProteinModelPortali A1B058.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 318586.Pden_0790.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABL68902 ; ABL68902 ; Pden_0790 .
    GeneIDi 4580614.
    KEGGi pde:Pden_0790.
    PATRICi 22852734. VBIParDen97112_0766.

    Phylogenomic databases

    eggNOGi COG0564.
    HOGENOMi HOG000275914.
    KOi K06179.
    OMAi LNYKGAD.
    OrthoDBi EOG6P070X.

    Enzyme and pathway databases

    BioCyci PDEN318586:GCVQ-802-MONOMER.

    Family and domain databases

    Gene3Di 3.10.290.10. 1 hit.
    InterProi IPR020103. PsdUridine_synth_cat_dom.
    IPR006225. PsdUridine_synth_RluC/D.
    IPR006224. PsdUridine_synth_RluC/D_CS.
    IPR006145. PsdUridine_synth_RsuA/RluD.
    IPR002942. S4_RNA-bd.
    [Graphical view ]
    Pfami PF00849. PseudoU_synth_2. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view ]
    SMARTi SM00363. S4. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55120. SSF55120. 1 hit.
    TIGRFAMsi TIGR00005. rluA_subfam. 1 hit.
    PROSITEi PS01129. PSI_RLU. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Pd 1222Imported.

    Entry informationi

    Entry nameiA1B058_PARDP
    AccessioniPrimary (citable) accession number: A1B058
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 23, 2007
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 49 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3