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A1B058 (A1B058_PARDP) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Pseudouridine synthase RuleBase RU003886

EC=5.4.99.- RuleBase RU003886
Gene names
Ordered Locus Names:Pden_0790 EMBL ABL68902.1
OrganismParacoccus denitrificans (strain Pd 1222) [Complete proteome] [HAMAP] EMBL ABL68902.1
Taxonomic identifier318586 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeParacoccus

Protein attributes

Sequence length348 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
   Molecular functionIsomerase RuleBase RU003886 EMBL ABL68902.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpseudouridine synthesis

Inferred from electronic annotation. Source: InterPro

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

pseudouridine synthase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A1B058 [UniParc].

Last modified January 23, 2007. Version 1.
Checksum: C983BEBDC9AF8C34

FASTA34837,956
        10         20         30         40         50         60 
MSGVQTIRVG EDEGEQRIDR WLKKRFPQLT QGAVEKMCRT GQLRVDGGRV KANTRIEPGQ 

        70         80         90        100        110        120 
EVRVPPLPEG APPPAAPKAS VKQSDAEMIQ SCVLWRDEHI IALNKPPGLP SQGGSGQGDR 

       130        140        150        160        170        180 
HVDGLTTALM FGYKDRPKLV HRLDKDTSGV LLLARTDRIA RALSEAFRHR LTRKIYWAAV 

       190        200        210        220        230        240 
AGVPHPRMGS IKYGLVKAPG RGRGGEGEKM MAVHPSAVAA TEGAKRAHTD YAVLDALGGR 

       250        260        270        280        290        300 
VSWVAMVPVT GRTHQLRAHM AEIGHPIVGD GKYGGSGQEN LGDGWGAQLG GEISRKLHLH 

       310        320        330        340 
ARMIRFEHPI TKKLITVTAP LPEHMSRTWK TLGWSENDVP EDPFAETA 

« Hide

References

[1]"Complete sequence of chromosome 1 of Paracoccus denitrificans PD1222."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Spiro S., Richardson D.J., Moir J.W.B., Ferguson S.J., van Spanning R.J.M., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Pd 1222.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000489 Genomic DNA. Translation: ABL68902.1.
RefSeqYP_914598.1. NC_008686.1.

3D structure databases

ProteinModelPortalA1B058.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING318586.Pden_0790.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABL68902; ABL68902; Pden_0790.
GeneID4580614.
KEGGpde:Pden_0790.
PATRIC22852734. VBIParDen97112_0766.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0564.
HOGENOMHOG000275914.
KOK06179.
OMAHMAEIGH.
OrthoDBEOG6P070X.
ProtClustDBCLSK933288.

Enzyme and pathway databases

BioCycPDEN318586:GCVQ-802-MONOMER.

Family and domain databases

Gene3D3.10.290.10. 1 hit.
InterProIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTSM00363. S4. 1 hit.
[Graphical view]
SUPFAMSSF55120. SSF55120. 1 hit.
TIGRFAMsTIGR00005. rluA_subfam. 1 hit.
PROSITEPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA1B058_PARDP
AccessionPrimary (citable) accession number: A1B058
Entry history
Integrated into UniProtKB/TrEMBL: January 23, 2007
Last sequence update: January 23, 2007
Last modified: November 13, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)