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A1AZ32

- A1AZ32_PARDP

UniProt

A1AZ32 - A1AZ32_PARDP

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Pden_0412

Organism
Paracoccus denitrificans (strain Pd 1222)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 1 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPDEN318586:GCVQ-420-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Pden_0412Imported
    OrganismiParacoccus denitrificans (strain Pd 1222)Imported
    Taxonomic identifieri318586 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeParacoccus
    ProteomesiUP000000361: Chromosome 1

    Interactioni

    Protein-protein interaction databases

    STRINGi318586.Pden_0412.

    Structurei

    3D structure databases

    ProteinModelPortaliA1AZ32.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiKSASTHN.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A1AZ32-1 [UniParc]FASTAAdd to Basket

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    MKAFAALLER LAFTPARNAK LQLLQHYLER TPDPDRGWAL AALTGDLELR    50
    RVTPSLLRGL AAERVDGELL ALSYDFVGDL AETIALLWPE GAEDDPSLSQ 100
    AVALLQGTGK AALPGAIAGM LDRLGPSERL AFLKLATGNL RIGVSARMAR 150
    TALAGMGVPS VPEIEEIWHG LAPPYAPLFG WLGGGARPES AALAPFRPVM 200
    LSTPTDLDEL RALDPGDYLA EWKWDGIRVQ AVSEGGMRRL YSRTGEDISH 250
    AFPDVIEAMD FDGTADGELI VRREGEVAPF GDLQKRLNRK TVGKGLLASH 300
    PAGLRLYDLL LWDGRDLRAE PLGARRTVLE AVDFGPRIDI SPLLDFATWE 350
    DLAALRAEPP AAVIEGVMIK RRDSAYVAGR PRGPWFKWKR DPMVVDAVLI 400
    YAQRGHGKRS GFHSDFTFGL WDGGELVPVG KAYFGFTDAE LRELDRFVRQ 450
    NTVERYGPVR ALAPKLVVEV AFEGLNRSTR HRSGVAMRFP RISRIRWDKP 500
    AAEADRLETL EAML 514
    Length:514
    Mass (Da):56,550
    Last modified:January 23, 2007 - v1
    Checksum:iAF98C5DA5ADFC8EA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000489 Genomic DNA. Translation: ABL68526.1.
    RefSeqiWP_011746759.1. NC_008686.1.
    YP_914222.1. NC_008686.1.

    Genome annotation databases

    EnsemblBacteriaiABL68526; ABL68526; Pden_0412.
    GeneIDi4578699.
    KEGGipde:Pden_0412.
    PATRICi22851980. VBIParDen97112_0393.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000489 Genomic DNA. Translation: ABL68526.1 .
    RefSeqi WP_011746759.1. NC_008686.1.
    YP_914222.1. NC_008686.1.

    3D structure databases

    ProteinModelPortali A1AZ32.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 318586.Pden_0412.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABL68526 ; ABL68526 ; Pden_0412 .
    GeneIDi 4578699.
    KEGGi pde:Pden_0412.
    PATRICi 22851980. VBIParDen97112_0393.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi KSASTHN.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci PDEN318586:GCVQ-420-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Pd 1222Imported.

    Entry informationi

    Entry nameiA1AZ32_PARDP
    AccessioniPrimary (citable) accession number: A1AZ32
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 23, 2007
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 52 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3