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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Pden_0412

Organism
Paracoccus denitrificans (strain Pd 1222)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPDEN318586:GCVQ-420-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Pden_0412Imported
OrganismiParacoccus denitrificans (strain Pd 1222)Imported
Taxonomic identifieri318586 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeParacoccus
ProteomesiUP000000361 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi318586.Pden_0412.

Structurei

3D structure databases

ProteinModelPortaliA1AZ32.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1AZ32-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAFAALLER LAFTPARNAK LQLLQHYLER TPDPDRGWAL AALTGDLELR
60 70 80 90 100
RVTPSLLRGL AAERVDGELL ALSYDFVGDL AETIALLWPE GAEDDPSLSQ
110 120 130 140 150
AVALLQGTGK AALPGAIAGM LDRLGPSERL AFLKLATGNL RIGVSARMAR
160 170 180 190 200
TALAGMGVPS VPEIEEIWHG LAPPYAPLFG WLGGGARPES AALAPFRPVM
210 220 230 240 250
LSTPTDLDEL RALDPGDYLA EWKWDGIRVQ AVSEGGMRRL YSRTGEDISH
260 270 280 290 300
AFPDVIEAMD FDGTADGELI VRREGEVAPF GDLQKRLNRK TVGKGLLASH
310 320 330 340 350
PAGLRLYDLL LWDGRDLRAE PLGARRTVLE AVDFGPRIDI SPLLDFATWE
360 370 380 390 400
DLAALRAEPP AAVIEGVMIK RRDSAYVAGR PRGPWFKWKR DPMVVDAVLI
410 420 430 440 450
YAQRGHGKRS GFHSDFTFGL WDGGELVPVG KAYFGFTDAE LRELDRFVRQ
460 470 480 490 500
NTVERYGPVR ALAPKLVVEV AFEGLNRSTR HRSGVAMRFP RISRIRWDKP
510
AAEADRLETL EAML
Length:514
Mass (Da):56,550
Last modified:January 22, 2007 - v1
Checksum:iAF98C5DA5ADFC8EA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000489 Genomic DNA. Translation: ABL68526.1.
RefSeqiWP_011746759.1. NC_008686.1.
YP_914222.1. NC_008686.1.

Genome annotation databases

EnsemblBacteriaiABL68526; ABL68526; Pden_0412.
KEGGipde:Pden_0412.
PATRICi22851980. VBIParDen97112_0393.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000489 Genomic DNA. Translation: ABL68526.1.
RefSeqiWP_011746759.1. NC_008686.1.
YP_914222.1. NC_008686.1.

3D structure databases

ProteinModelPortaliA1AZ32.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi318586.Pden_0412.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABL68526; ABL68526; Pden_0412.
KEGGipde:Pden_0412.
PATRICi22851980. VBIParDen97112_0393.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciPDEN318586:GCVQ-420-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Pd 1222Imported.

Entry informationi

Entry nameiA1AZ32_PARDP
AccessioniPrimary (citable) accession number: A1AZ32
Entry historyi
Integrated into UniProtKB/TrEMBL: January 22, 2007
Last sequence update: January 22, 2007
Last modified: March 31, 2015
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.