A1AZ32 (A1AZ32_PARDP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABL68526.1

Gene names

Ordered Locus Names:

Pden_0412 EMBL ABL68526.1

Organism

Paracoccus denitrificans (strain Pd 1222) [Complete proteome] [HAMAP] EMBL ABL68526.1

Taxonomic identifier

318586 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Paracoccus › Paracoccus denitrificans

Protein attributes

Sequence length	514 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABL68526.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1AZ32 [UniParc]. Last modified January 23, 2007. Version 1. Checksum: AF98C5DA5ADFC8EA	FASTA	514	56,550
	10 20 30 40 50 60 MKAFAALLER LAFTPARNAK LQLLQHYLER TPDPDRGWAL AALTGDLELR RVTPSLLRGL 70 80 90 100 110 120 AAERVDGELL ALSYDFVGDL AETIALLWPE GAEDDPSLSQ AVALLQGTGK AALPGAIAGM 130 140 150 160 170 180 LDRLGPSERL AFLKLATGNL RIGVSARMAR TALAGMGVPS VPEIEEIWHG LAPPYAPLFG 190 200 210 220 230 240 WLGGGARPES AALAPFRPVM LSTPTDLDEL RALDPGDYLA EWKWDGIRVQ AVSEGGMRRL 250 260 270 280 290 300 YSRTGEDISH AFPDVIEAMD FDGTADGELI VRREGEVAPF GDLQKRLNRK TVGKGLLASH 310 320 330 340 350 360 PAGLRLYDLL LWDGRDLRAE PLGARRTVLE AVDFGPRIDI SPLLDFATWE DLAALRAEPP 370 380 390 400 410 420 AAVIEGVMIK RRDSAYVAGR PRGPWFKWKR DPMVVDAVLI YAQRGHGKRS GFHSDFTFGL 430 440 450 460 470 480 WDGGELVPVG KAYFGFTDAE LRELDRFVRQ NTVERYGPVR ALAPKLVVEV AFEGLNRSTR 490 500 510 HRSGVAMRFP RISRIRWDKP AAEADRLETL EAML

References

[1]

"Complete sequence of chromosome 1 of Paracoccus denitrificans PD1222." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Spiro S., Richardson D.J., Moir J.W.B., Ferguson S.J., van Spanning R.J.M., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Pd 1222.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000489 Genomic DNA. Translation: ABL68526.1.
RefSeq	YP_914222.1. NC_008686.1.
3D structure databases
ProteinModelPortal	A1AZ32.
ModBase	Search...
Protein-protein interaction databases
STRING	318586.Pden_0412.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABL68526; ABL68526; Pden_0412.
GeneID	4578699.
KEGG	pde:Pden_0412.
PATRIC	22851980. VBIParDen97112_0393.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A1AZ32_PARDP

Accession

Primary (citable) accession number: A1AZ32

Entry history

Integrated into UniProtKB/TrEMBL:	January 23, 2007
Last sequence update:	January 23, 2007
Last modified:	May 1, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)