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Protein

Ribosomal RNA small subunit methyltransferase B

Gene

Ppro_3242

Organism
Pelobacter propionicus (strain DSM 2379)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. rRNA methyltransferase activity Source: InterPro

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseSAAS annotation, Transferase

Keywords - Biological processi

rRNA processingSAAS annotation

Keywords - Ligandi

RNA-bindingSAAS annotation, S-adenosyl-L-methionineSAAS annotation

Enzyme and pathway databases

BioCyciPPRO338966:GHL0-3299-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase BSAAS annotation
Gene namesi
Ordered Locus Names:Ppro_3242Imported
OrganismiPelobacter propionicus (strain DSM 2379)Imported
Taxonomic identifieri338966 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesPelobacteraceaePelobacter
ProteomesiUP000006732: Chromosome

Subcellular locationi

Cytoplasm SAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi338966.Ppro_3242.

Structurei

3D structure databases

ProteinModelPortaliA1AU15.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0144.
HOGENOMiHOG000037300.
KOiK03500.
OMAiLRVNRQH.
OrthoDBiEOG6091D0.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR018314. Fmu/NOL1/Nop2p_CS.
IPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Nol1_Nop2_Fmu. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS01153. NOL1_NOP2_SUN. 1 hit.
PS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1AU15-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAPDLKRSN PRQSACSVLL RIQREGCYAD QLMDRELESG GLTGPDRGLF
60 70 80 90 100
AELVFGALRR QGTLDHILSS LLTQPLSRLE PQALILLRVG LYQLVYLDRI
110 120 130 140 150
PESAAVNESV NLAKKTLPRA SGLVNAVLRN YLRRGDDIPF PDPLAMPAES
160 170 180 190 200
IAARHSHPLW LVRQWIDQLG VEEAEALAEA SSRQAPLALR ANTLAISRDD
210 220 230 240 250
LLVKFSTNGI QATPCRFSPH GILVEGRHQI TSLPGFHEGL FAVQDEASQM
260 270 280 290 300
AGLLLDPRPG ERILDACAAP GGKATHLAQL MNDRGELLAM DVSGVKLPLI
310 320 330 340 350
QESAHRLGIS IIRTRRADLL NSAAFPVDSF DRVLLDAPCS GLGVIRRNPE
360 370 380 390 400
AKWRLRPEDL TRLAETQRRM FANAVRMLKP GGRLVYSTCS TSREENEAVL
410 420 430 440 450
HAFLSRQDGV ILEDLNQVYP CWSELFTREG MLRSWPHCHG MDGFFAARLI

KR
Length:452
Mass (Da):50,073
Last modified:January 23, 2007 - v1
Checksum:iEF82818E32942B24
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000482 Genomic DNA. Translation: ABL00836.1.
RefSeqiYP_902893.1. NC_008609.1.

Genome annotation databases

EnsemblBacteriaiABL00836; ABL00836; Ppro_3242.
GeneIDi4572478.
KEGGippd:Ppro_3242.
PATRICi22899623. VBIPelPro64470_3398.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000482 Genomic DNA. Translation: ABL00836.1.
RefSeqiYP_902893.1. NC_008609.1.

3D structure databases

ProteinModelPortaliA1AU15.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi338966.Ppro_3242.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABL00836; ABL00836; Ppro_3242.
GeneIDi4572478.
KEGGippd:Ppro_3242.
PATRICi22899623. VBIPelPro64470_3398.

Phylogenomic databases

eggNOGiCOG0144.
HOGENOMiHOG000037300.
KOiK03500.
OMAiLRVNRQH.
OrthoDBiEOG6091D0.

Enzyme and pathway databases

BioCyciPPRO338966:GHL0-3299-MONOMER.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR018314. Fmu/NOL1/Nop2p_CS.
IPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Nol1_Nop2_Fmu. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS01153. NOL1_NOP2_SUN. 1 hit.
PS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Pelobacter propionicus DSM 2379."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F.
    , Land M., Hauser L., Kyrpides N., Kim E., Lovley D., Richardson P.
    Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 2379Imported.

Entry informationi

Entry nameiA1AU15_PELPD
AccessioniPrimary (citable) accession number: A1AU15
Entry historyi
Integrated into UniProtKB/TrEMBL: January 23, 2007
Last sequence update: January 23, 2007
Last modified: March 4, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.