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Protein

Selenide, water dikinase

Gene

selD

Organism
Pelobacter propionicus (strain DSM 2379)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Synthesizes selenophosphate from selenide and ATP.UniRule annotation

Catalytic activityi

ATP + selenide + H2O = AMP + selenophosphate + phosphate.UniRule annotation

Cofactori

Mg2+UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei17 – 171UniRule annotation
Sitei20 – 201Important for catalytic activityUniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi229 – 2357ATPUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Keywords - Ligandi

ATP-binding, Magnesium, Nucleotide-binding, Selenium

Enzyme and pathway databases

BioCyciPPRO338966:GHL0-1739-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Selenide, water dikinaseUniRule annotation (EC:2.7.9.3UniRule annotation)
Alternative name(s):
Selenium donor proteinUniRule annotation
Selenophosphate synthaseUniRule annotation
Gene namesi
Name:selDUniRule annotation
Ordered Locus Names:Ppro_1707
OrganismiPelobacter propionicus (strain DSM 2379)
Taxonomic identifieri338966 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesDesulfuromonadaceaePelobacter
Proteomesi
  • UP000006732 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 348348Selenide, water dikinasePRO_1000051600Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi338966.Ppro_1707.

Structurei

3D structure databases

ProteinModelPortaliA1APP9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the selenophosphate synthase 1 family. Class I subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D4F. Bacteria.
COG0709. LUCA.
HOGENOMiHOG000219299.
KOiK01008.
OMAiCEMALGA.
OrthoDBiEOG6VF32H.

Family and domain databases

Gene3Di3.30.1330.10. 1 hit.
3.90.650.10. 1 hit.
HAMAPiMF_00625. SelD.
InterProiIPR010918. AIR_synth_C_dom.
IPR016188. PurM-like_N.
IPR023061. SelD_I.
IPR004536. SPS/SelD.
[Graphical view]
PfamiPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFiPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMiSSF56042. SSF56042. 1 hit.
TIGRFAMsiTIGR00476. selD. 1 hit.

Sequencei

Sequence statusi: Complete.

A1APP9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDTTIRLTQ TVKGAGCAAK LAPGDLDRAL CGLDLPVDPN LLVGLERADD
60 70 80 90 100
AGVYRISDDL ALVQTIDFFP PMVDDPYSFG QIAAANALSD IYAMGGVPKT
110 120 130 140 150
AMNVVAFPAK TMDISVLRSV IEGGLDKMRE AGVVLVGGHT VEDSELKYGL
160 170 180 190 200
SVTGFIHPDR ILTKKNLQTG DCLILTKPLG TGIVSTAIKA GLAGSDLTER
210 220 230 240 250
VIRNMTALNR DAALVMGDFT VHACTDITGF GFLGHLAEMV VDSGCGVRII
260 270 280 290 300
AADVPHYPEA LEWADMGLIP GGAYNNRDFR GMFVDFGAAV SRRFRDLLFD
310 320 330 340
PQTSGGLLIA VAPNEAEQLV AALKATGIEC AAVVGEVVEE PLERIVVE
Length:348
Mass (Da):36,778
Last modified:January 23, 2007 - v1
Checksum:i544231A42EC3A7E7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000482 Genomic DNA. Translation: ABK99319.1.
RefSeqiWP_011735596.1. NC_008609.1.

Genome annotation databases

EnsemblBacteriaiABK99319; ABK99319; Ppro_1707.
KEGGippd:Ppro_1707.
PATRICi22896511. VBIPelPro64470_1864.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000482 Genomic DNA. Translation: ABK99319.1.
RefSeqiWP_011735596.1. NC_008609.1.

3D structure databases

ProteinModelPortaliA1APP9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi338966.Ppro_1707.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABK99319; ABK99319; Ppro_1707.
KEGGippd:Ppro_1707.
PATRICi22896511. VBIPelPro64470_1864.

Phylogenomic databases

eggNOGiENOG4105D4F. Bacteria.
COG0709. LUCA.
HOGENOMiHOG000219299.
KOiK01008.
OMAiCEMALGA.
OrthoDBiEOG6VF32H.

Enzyme and pathway databases

BioCyciPPRO338966:GHL0-1739-MONOMER.

Family and domain databases

Gene3Di3.30.1330.10. 1 hit.
3.90.650.10. 1 hit.
HAMAPiMF_00625. SelD.
InterProiIPR010918. AIR_synth_C_dom.
IPR016188. PurM-like_N.
IPR023061. SelD_I.
IPR004536. SPS/SelD.
[Graphical view]
PfamiPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFiPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMiSSF56042. SSF56042. 1 hit.
TIGRFAMsiTIGR00476. selD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Pelobacter propionicus DSM 2379."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F.
    , Land M., Hauser L., Kyrpides N., Kim E., Lovley D., Richardson P.
    Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 2379.

Entry informationi

Entry nameiSELD_PELPD
AccessioniPrimary (citable) accession number: A1APP9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: January 23, 2007
Last modified: June 8, 2016
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.