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Protein
Submitted name:

Pyridoxal-dependent decarboxylase

Gene

Ppro_0931

Organism
Pelobacter propionicus (strain DSM 2379)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciPPRO338966:GHL0-941-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-dependent decarboxylaseImported
Gene namesi
Ordered Locus Names:Ppro_0931Imported
OrganismiPelobacter propionicus (strain DSM 2379)Imported
Taxonomic identifieri338966 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesPelobacteraceaePelobacter
ProteomesiUP000006732 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi338966.Ppro_0931.

Structurei

3D structure databases

ProteinModelPortaliA1AMJ0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

A1AMJ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKKRDAARA NLETLYRIFT VPEAPDSTLG AIDQAIADDV IGFLQTHIVA
60 70 80 90 100
VEHDLEEIEA YYSSPVIPEE PTYVSEYTEF VKRNLVAQSV HTAAPGFVGH
110 120 130 140 150
MTSALPYFML PLARLMTALN QNLVKVETSK AFTPMERQVL AMLHRLVYRR
160 170 180 190 200
PDDFYPPWIH NSQHALGAFC SGGTIANVTA LWVARNRLFA PSRTFGGIAR
210 220 230 240 250
EGLFRALKHH GCDGIAVLVS ERGHYSFGKA TDLLGFGRDN LIKVKTDGHN
260 270 280 290 300
RIDLKLLREE YRRLRDRNIL PLALVGIAGT TETGNVDPLE AMADFAQEIG
310 320 330 340 350
CHFHVDAAWG GPTLFSDRYR SLLAGIERAD SVTIDGHKQL YVPMGAGMVV
360 370 380 390 400
FKDPTAQSAI EHHANYILRR GSKDLGSHTL EGSRPGMAML VHAGFCIIGR
410 420 430 440 450
KGYELLIDRG IERARTFAEM VRSHPDFELT SEPELNILTY RFSPAKVQQA
460 470 480 490 500
LARATDEQRP YINALLDQVN QQLQKHQREA GKTFVSRTRL CVGPRQEEFT
510 520 530 540 550
VLRAVLANPL TTDEIMEAIL AEQCEIARTP EIQALLRQIE RRCAGGERDE
560
PLQLQDYPGE LDELDES
Length:567
Mass (Da):63,406
Last modified:January 23, 2007 - v1
Checksum:iF601AEAB63FE23B3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000482 Genomic DNA. Translation: ABK98560.1.
RefSeqiWP_011734869.1. NC_008609.1.
YP_900618.1. NC_008609.1.

Genome annotation databases

EnsemblBacteriaiABK98560; ABK98560; Ppro_0931.
KEGGippd:Ppro_0931.
PATRICi22894927. VBIPelPro64470_1095.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000482 Genomic DNA. Translation: ABK98560.1.
RefSeqiWP_011734869.1. NC_008609.1.
YP_900618.1. NC_008609.1.

3D structure databases

ProteinModelPortaliA1AMJ0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi338966.Ppro_0931.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABK98560; ABK98560; Ppro_0931.
KEGGippd:Ppro_0931.
PATRICi22894927. VBIPelPro64470_1095.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Enzyme and pathway databases

BioCyciPPRO338966:GHL0-941-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Pelobacter propionicus DSM 2379."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F.
    , Land M., Hauser L., Kyrpides N., Kim E., Lovley D., Richardson P.
    Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 2379Imported.

Entry informationi

Entry nameiA1AMJ0_PELPD
AccessioniPrimary (citable) accession number: A1AMJ0
Entry historyi
Integrated into UniProtKB/TrEMBL: January 23, 2007
Last sequence update: January 23, 2007
Last modified: May 27, 2015
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.