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Protein

Glucans biosynthesis protein D

Gene

mdoD

Organism
Escherichia coli O1:K1 / APEC
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Probably involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans (OPGs).UniRule annotation

Pathwayi

GO - Molecular functioni

  1. carbohydrate binding Source: InterPro
  2. catalytic activity Source: InterPro

GO - Biological processi

  1. glucan biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Enzyme and pathway databases

UniPathwayiUPA00637.

Names & Taxonomyi

Protein namesi
Recommended name:
Glucans biosynthesis protein DUniRule annotation
Gene namesi
Name:mdoDUniRule annotation
Synonyms:opgDUniRule annotation
Ordered Locus Names:Ecok1_13780
ORF Names:APECO1_572
OrganismiEscherichia coli O1:K1 / APEC
Taxonomic identifieri405955 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000008216 Componenti: Chromosome

Subcellular locationi

Periplasm UniRule annotation

GO - Cellular componenti

  1. periplasmic space Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3232Tat-type signalUniRule annotationAdd
BLAST
Chaini33 – 551519Glucans biosynthesis protein DPRO_1000064545Add
BLAST

Post-translational modificationi

Predicted to be exported by the Tat system. The position of the signal peptide cleavage has not been experimentally proven.

Interactioni

Protein-protein interaction databases

STRINGi405955.APECO1_572.

Structurei

3D structure databases

SMRiA1AB32. Positions 44-538.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the OpgD/OpgG family.UniRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG3131.
HOGENOMiHOG000288262.
OMAiFAGFRAF.
OrthoDBiEOG6FZ487.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.70.98.10. 1 hit.
HAMAPiMF_01068. MdoD_OpgD.
InterProiIPR011013. Gal_mutarotase_SF_dom.
IPR023724. Glucan_biosyn_MdoD.
IPR007444. Glucan_biosyn_MdoG_C.
IPR014438. Glucan_biosyn_MdoGD.
IPR014718. Glyco_hydro-type_carb-bd_sub.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR006311. TAT_signal.
IPR019546. TAT_signal_bac_arc.
[Graphical view]
PfamiPF04349. MdoG. 1 hit.
[Graphical view]
PIRSFiPIRSF006281. MdoG. 1 hit.
SUPFAMiSSF74650. SSF74650. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01409. TAT_signal_seq. 1 hit.
PROSITEiPS51318. TAT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A1AB32-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDRRRFIKGS MAMAAVCGTS GIASLFSQAA FAADSDIADG QTQRFDFSIL
60 70 80 90 100
QSMAHDLAQT AWRGAPRPLP DTLATMTPQA YNSIQYDAEK SLWHNVENRQ
110 120 130 140 150
LDAQFFHMGM GFRRRVRMFS VDPATHLARE IHFRPELFKY NDAGVDTKQL
160 170 180 190 200
EGQSDLGFAG FRVFKAPELA RRDVVSFLGA SYFRAVDDTY QYGLSARGLA
210 220 230 240 250
IDTYTDSKEE FPDFTAFWFD TVKPGATTFT VYALLDSASI TGAYKFTIHC
260 270 280 290 300
EKNQVIMDVE NHLYARKDIK QLGIAPMTSM FSCGTNERRM CDTIHPQIHD
310 320 330 340 350
SDRLSMWRGN GEWICRPLNN PQKLQFNAYT DNNPKGFGLL QLDRDFSHYQ
360 370 380 390 400
DIMGWYNKRP SLWVEPRNKW GKGTIGLMEI PTTGETLDNI VCFWQPEKAV
410 420 430 440 450
KAGDEFAFQY RLYWSAQPPV HCPLARVMAT RTGMGGFPEG WAPGEHYPEK
460 470 480 490 500
WARRFAVDFV GGDLKAAAPK GIEPVITLSS GEAKQIEILY IEPIDGYRIQ
510 520 530 540 550
FDWYPTSDST DPVDMRMYLR CQGDAISETW LYQYFPPAPD KRQYVDDRVM

S
Length:551
Mass (Da):62,795
Last modified:January 22, 2007 - v1
Checksum:iE4A6DC9004C4E893
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000468 Genomic DNA. Translation: ABJ00872.1.
RefSeqiYP_852586.1. NC_008563.1.

Genome annotation databases

EnsemblBacteriaiABJ00872; ABJ00872; APECO1_572.
KEGGiecv:APECO1_572.
PATRICi18214541. VBIEscCol127180_1550.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000468 Genomic DNA. Translation: ABJ00872.1.
RefSeqiYP_852586.1. NC_008563.1.

3D structure databases

SMRiA1AB32. Positions 44-538.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi405955.APECO1_572.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABJ00872; ABJ00872; APECO1_572.
KEGGiecv:APECO1_572.
PATRICi18214541. VBIEscCol127180_1550.

Phylogenomic databases

eggNOGiCOG3131.
HOGENOMiHOG000288262.
OMAiFAGFRAF.
OrthoDBiEOG6FZ487.

Enzyme and pathway databases

UniPathwayiUPA00637.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.70.98.10. 1 hit.
HAMAPiMF_01068. MdoD_OpgD.
InterProiIPR011013. Gal_mutarotase_SF_dom.
IPR023724. Glucan_biosyn_MdoD.
IPR007444. Glucan_biosyn_MdoG_C.
IPR014438. Glucan_biosyn_MdoGD.
IPR014718. Glyco_hydro-type_carb-bd_sub.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR006311. TAT_signal.
IPR019546. TAT_signal_bac_arc.
[Graphical view]
PfamiPF04349. MdoG. 1 hit.
[Graphical view]
PIRSFiPIRSF006281. MdoG. 1 hit.
SUPFAMiSSF74650. SSF74650. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01409. TAT_signal_seq. 1 hit.
PROSITEiPS51318. TAT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes."
    Johnson T.J., Kariyawasam S., Wannemuehler Y., Mangiamele P., Johnson S.J., Doetkott C., Skyberg J.A., Lynne A.M., Johnson J.R., Nolan L.K.
    J. Bacteriol. 189:3228-3236(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiOPGD_ECOK1
AccessioniPrimary (citable) accession number: A1AB32
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 4, 2008
Last sequence update: January 22, 2007
Last modified: March 31, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.