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Protein

30S ribosomal protein S16

Gene

rpsP

Organism
Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciBADO367928:GHPT-217-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S16UniRule annotation
Gene namesi
Name:rpsPUniRule annotation
Ordered Locus Names:BAD_0209
OrganismiBifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a)
Taxonomic identifieri367928 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaBifidobacterialesBifidobacteriaceaeBifidobacterium
Proteomesi
  • UP000008702 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14914930S ribosomal protein S16PRO_1000049217Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi367928.BAD_0209.

Structurei

3D structure databases

ProteinModelPortaliA0ZZV7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S16P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K5M. Bacteria.
COG0228. LUCA.
HOGENOMiHOG000246720.
KOiK02959.
OMAiENLGIYQ.
OrthoDBiEOG6CVVKH.

Family and domain databases

Gene3Di3.30.1320.10. 1 hit.
HAMAPiMF_00385. Ribosomal_S16.
InterProiIPR000307. Ribosomal_S16.
IPR020592. Ribosomal_S16_CS.
IPR023803. Ribosomal_S16_dom.
[Graphical view]
PANTHERiPTHR12919. PTHR12919. 1 hit.
PfamiPF00886. Ribosomal_S16. 1 hit.
[Graphical view]
SUPFAMiSSF54565. SSF54565. 1 hit.
TIGRFAMsiTIGR00002. S16. 1 hit.
PROSITEiPS00732. RIBOSOMAL_S16. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0ZZV7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATKIRLKRM GKKFYAFYRV VIMDSRTKRD GRAIEEIGTY NPNTQPSTIN
60 70 80 90 100
INSERAQYWL GVGAQPTEQV LNLLKITGDW QKFKGLDGAE GTLKTVEAGP
110 120 130 140
DAAARVEAVE AQAQKLKAAK SEADAKAKAE AEAAATEEAP AEEPAAEAE
Length:149
Mass (Da):16,169
Last modified:January 23, 2007 - v1
Checksum:i895283BCFFE9C4A5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009256 Genomic DNA. Translation: BAF38990.1.
RefSeqiWP_011742735.1. NC_008618.1.

Genome annotation databases

EnsemblBacteriaiBAF38990; BAF38990; BAD_0209.
GeneIDi4557606.
KEGGibad:BAD_0209.
PATRICi21099649. VBIBifAdo27973_0226.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009256 Genomic DNA. Translation: BAF38990.1.
RefSeqiWP_011742735.1. NC_008618.1.

3D structure databases

ProteinModelPortaliA0ZZV7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi367928.BAD_0209.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAF38990; BAF38990; BAD_0209.
GeneIDi4557606.
KEGGibad:BAD_0209.
PATRICi21099649. VBIBifAdo27973_0226.

Phylogenomic databases

eggNOGiENOG4105K5M. Bacteria.
COG0228. LUCA.
HOGENOMiHOG000246720.
KOiK02959.
OMAiENLGIYQ.
OrthoDBiEOG6CVVKH.

Enzyme and pathway databases

BioCyciBADO367928:GHPT-217-MONOMER.

Family and domain databases

Gene3Di3.30.1320.10. 1 hit.
HAMAPiMF_00385. Ribosomal_S16.
InterProiIPR000307. Ribosomal_S16.
IPR020592. Ribosomal_S16_CS.
IPR023803. Ribosomal_S16_dom.
[Graphical view]
PANTHERiPTHR12919. PTHR12919. 1 hit.
PfamiPF00886. Ribosomal_S16. 1 hit.
[Graphical view]
SUPFAMiSSF54565. SSF54565. 1 hit.
TIGRFAMsiTIGR00002. S16. 1 hit.
PROSITEiPS00732. RIBOSOMAL_S16. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Bifidobacterium adolescentis complete genome sequence."
    Suzuki T., Tsuda Y., Kanou N., Inoue T., Kumazaki K., Nagano S., Hirai S., Tanaka K., Watanabe K.
    Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 15703 / DSM 20083 / NCTC 11814 / E194a.

Entry informationi

Entry nameiRS16_BIFAA
AccessioniPrimary (citable) accession number: A0ZZV7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: January 23, 2007
Last modified: December 9, 2015
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.