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Protein

NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

Gene

ndhD

Organism
Gossypium barbadense (Sea-island cotton) (Egyptian cotton)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

NAD, NADP, Plastoquinone

Names & Taxonomyi

Protein namesi
Recommended name:
NAD(P)H-quinone oxidoreductase chain 4, chloroplasticUniRule annotation (EC:1.6.5.-UniRule annotation)
Alternative name(s):
NAD(P)H dehydrogenase, chain 4UniRule annotation
NADH-plastoquinone oxidoreductase chain 4UniRule annotation
Gene namesi
Name:ndhDUniRule annotation
Encoded oniPlastid; Chloroplast
OrganismiGossypium barbadense (Sea-island cotton) (Egyptian cotton)
Taxonomic identifieri3634 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsMalvalesMalvaceaeMalvoideaeGossypium

Subcellular locationi

  • Plastidchloroplast thylakoid membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei4 – 2421HelicalUniRule annotationAdd
BLAST
Transmembranei31 – 5121HelicalUniRule annotationAdd
BLAST
Transmembranei87 – 10721HelicalUniRule annotationAdd
BLAST
Transmembranei113 – 13018HelicalUniRule annotationAdd
BLAST
Transmembranei134 – 15421HelicalUniRule annotationAdd
BLAST
Transmembranei167 – 18721HelicalUniRule annotationAdd
BLAST
Transmembranei208 – 22821HelicalUniRule annotationAdd
BLAST
Transmembranei242 – 26221HelicalUniRule annotationAdd
BLAST
Transmembranei272 – 29221HelicalUniRule annotationAdd
BLAST
Transmembranei305 – 32521HelicalUniRule annotationAdd
BLAST
Transmembranei330 – 35021HelicalUniRule annotationAdd
BLAST
Transmembranei386 – 40621HelicalUniRule annotationAdd
BLAST
Transmembranei416 – 43621HelicalUniRule annotationAdd
BLAST
Transmembranei462 – 48221HelicalUniRule annotationAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 500500NAD(P)H-quinone oxidoreductase chain 4, chloroplasticPRO_0000275909Add
BLAST

Keywords - PTMi

Quinone

Family & Domainsi

Sequence similaritiesi

Belongs to the complex I subunit 4 family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

HAMAPiMF_00491. NDH1_NuoM.
InterProiIPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR003918. NADH_UbQ_OxRdtase.
IPR001750. ND/Mrp_mem.
[Graphical view]
PfamiPF00361. Oxidored_q1. 1 hit.
[Graphical view]
PRINTSiPR01437. NUOXDRDTASE4.
TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.

Sequencei

Sequence statusi: Complete.

A0ZZ85-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNYFPWLTII VFLPISAGSL LFFLPHKGNK LIKWYTICIC ILELLLTTYA
60 70 80 90 100
FCYHFRLDDP LIQLAEDYKW INFFDFYWRL GIDGLSIGPI LLTGFITTLA
110 120 130 140 150
TLAAWPVTRD SRLFHFLMLA MYSGQIGSFS SRDLLLFFIM WEFELIPVYL
160 170 180 190 200
LLSMWGGKKR LYSATKFILY TAGGSVFLLI GVLGLGLYGS NEPTLNFETL
210 220 230 240 250
ANQSYPVALE IIFYIGFLIA FAVKSPIIPL HTWLPDTHGE AHYSTCMLLA
260 270 280 290 300
GILLKMGAYG LVRINMELLP HAHSIFSPWL IIVGTMQIIY AASTSLGQRN
310 320 330 340 350
LKKRIAYSSV SHMGFIIIGI GSITDTGLNG AILQIISHGF IGAALFFLAG
360 370 380 390 400
TSYDRMRLVY LDEMGGMAVS IPKIFTMFSI LSMASLALPG MSGFVAELIV
410 420 430 440 450
FFGIITSQKY FLMPKILITF VMAIGMILTP IYSLSMSRQM FYGYKLFNAP
460 470 480 490 500
SSYFFDSGPR ELFVSISIFL PVIGIGIYPD FVLSLSGEKV ETILYNYFYR
Length:500
Mass (Da):56,263
Last modified:January 23, 2007 - v1
Checksum:iD4AC0EA2333E00C8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009123 Genomic DNA. Translation: BAF41297.1.
RefSeqiYP_913236.1. NC_008641.1.

Genome annotation databases

GeneIDi4575197.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009123 Genomic DNA. Translation: BAF41297.1.
RefSeqiYP_913236.1. NC_008641.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi4575197.

Family and domain databases

HAMAPiMF_00491. NDH1_NuoM.
InterProiIPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR003918. NADH_UbQ_OxRdtase.
IPR001750. ND/Mrp_mem.
[Graphical view]
PfamiPF00361. Oxidored_q1. 1 hit.
[Graphical view]
PRINTSiPR01437. NUOXDRDTASE4.
TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete nucleotide sequence of the cotton (Gossypium barbadense L.) chloroplast genome with a comparative analysis of sequences among 9 dicot plants."
    Ibrahim R.I.H., Azuma J., Sakamoto M.
    Genes Genet. Syst. 81:311-321(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiNU4C_GOSBA
AccessioniPrimary (citable) accession number: A0ZZ85
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: January 23, 2007
Last modified: April 1, 2015
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.