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A0ZZ85

- NU4C_GOSBA

UniProt

A0ZZ85 - NU4C_GOSBA

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Protein

NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

Gene
ndhD
Organism
Gossypium barbadense (Sea-island cotton) (Egyptian cotton)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.UniRule annotation

GO - Molecular functioni

  1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
  2. quinone binding Source: UniProtKB-KW

GO - Biological processi

  1. ATP synthesis coupled electron transport Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

NAD, NADP, Plastoquinone

Names & Taxonomyi

Protein namesi
Recommended name:
NAD(P)H-quinone oxidoreductase chain 4, chloroplastic (EC:1.6.5.-)
Alternative name(s):
NAD(P)H dehydrogenase, chain 4
NADH-plastoquinone oxidoreductase chain 4
Gene namesi
Name:ndhD
Encoded oniPlastid; Chloroplast
OrganismiGossypium barbadense (Sea-island cotton) (Egyptian cotton)
Taxonomic identifieri3634 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsMalvalesMalvaceaeMalvoideaeGossypium

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei4 – 2421Helical; Reviewed predictionAdd
BLAST
Transmembranei31 – 5121Helical; Reviewed predictionAdd
BLAST
Transmembranei87 – 10721Helical; Reviewed predictionAdd
BLAST
Transmembranei113 – 13018Helical; Reviewed predictionAdd
BLAST
Transmembranei134 – 15421Helical; Reviewed predictionAdd
BLAST
Transmembranei167 – 18721Helical; Reviewed predictionAdd
BLAST
Transmembranei208 – 22821Helical; Reviewed predictionAdd
BLAST
Transmembranei242 – 26221Helical; Reviewed predictionAdd
BLAST
Transmembranei272 – 29221Helical; Reviewed predictionAdd
BLAST
Transmembranei305 – 32521Helical; Reviewed predictionAdd
BLAST
Transmembranei330 – 35021Helical; Reviewed predictionAdd
BLAST
Transmembranei386 – 40621Helical; Reviewed predictionAdd
BLAST
Transmembranei416 – 43621Helical; Reviewed predictionAdd
BLAST
Transmembranei462 – 48221Helical; Reviewed predictionAdd
BLAST

GO - Cellular componenti

  1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
  2. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 500500NAD(P)H-quinone oxidoreductase chain 4, chloroplasticUniRule annotationPRO_0000275909Add
BLAST

Keywords - PTMi

Quinone

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

HAMAPiMF_00491. NDH1_NuoM.
InterProiIPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR003918. NADH_UbQ_OxRdtase.
[Graphical view]
PfamiPF00361. Oxidored_q1. 1 hit.
[Graphical view]
PRINTSiPR01437. NUOXDRDTASE4.
TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.

Sequencei

Sequence statusi: Complete.

A0ZZ85-1 [UniParc]FASTAAdd to Basket

« Hide

MNYFPWLTII VFLPISAGSL LFFLPHKGNK LIKWYTICIC ILELLLTTYA    50
FCYHFRLDDP LIQLAEDYKW INFFDFYWRL GIDGLSIGPI LLTGFITTLA 100
TLAAWPVTRD SRLFHFLMLA MYSGQIGSFS SRDLLLFFIM WEFELIPVYL 150
LLSMWGGKKR LYSATKFILY TAGGSVFLLI GVLGLGLYGS NEPTLNFETL 200
ANQSYPVALE IIFYIGFLIA FAVKSPIIPL HTWLPDTHGE AHYSTCMLLA 250
GILLKMGAYG LVRINMELLP HAHSIFSPWL IIVGTMQIIY AASTSLGQRN 300
LKKRIAYSSV SHMGFIIIGI GSITDTGLNG AILQIISHGF IGAALFFLAG 350
TSYDRMRLVY LDEMGGMAVS IPKIFTMFSI LSMASLALPG MSGFVAELIV 400
FFGIITSQKY FLMPKILITF VMAIGMILTP IYSLSMSRQM FYGYKLFNAP 450
SSYFFDSGPR ELFVSISIFL PVIGIGIYPD FVLSLSGEKV ETILYNYFYR 500
Length:500
Mass (Da):56,263
Last modified:January 23, 2007 - v1
Checksum:iD4AC0EA2333E00C8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP009123 Genomic DNA. Translation: BAF41297.1.
RefSeqiYP_913236.1. NC_008641.1.

Genome annotation databases

GeneIDi4575197.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP009123 Genomic DNA. Translation: BAF41297.1 .
RefSeqi YP_913236.1. NC_008641.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4575197.

Family and domain databases

HAMAPi MF_00491. NDH1_NuoM.
InterProi IPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR003918. NADH_UbQ_OxRdtase.
[Graphical view ]
Pfami PF00361. Oxidored_q1. 1 hit.
[Graphical view ]
PRINTSi PR01437. NUOXDRDTASE4.
TIGRFAMsi TIGR01972. NDH_I_M. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete nucleotide sequence of the cotton (Gossypium barbadense L.) chloroplast genome with a comparative analysis of sequences among 9 dicot plants."
    Ibrahim R.I.H., Azuma J., Sakamoto M.
    Genes Genet. Syst. 81:311-321(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiNU4C_GOSBA
AccessioniPrimary (citable) accession number: A0ZZ85
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: January 23, 2007
Last modified: May 14, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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