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A0ZZ85

- NU4C_GOSBA

UniProt

A0ZZ85 - NU4C_GOSBA

Protein

NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

Gene

ndhD

Organism
Gossypium barbadense (Sea-island cotton) (Egyptian cotton)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.UniRule annotation

    GO - Molecular functioni

    1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
    2. quinone binding Source: UniProtKB-KW

    GO - Biological processi

    1. ATP synthesis coupled electron transport Source: InterPro

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Ligandi

    NAD, NADP, Plastoquinone

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    NAD(P)H-quinone oxidoreductase chain 4, chloroplasticUniRule annotation (EC:1.6.5.-UniRule annotation)
    Alternative name(s):
    NAD(P)H dehydrogenase, chain 4UniRule annotation
    NADH-plastoquinone oxidoreductase chain 4UniRule annotation
    Gene namesi
    Name:ndhDUniRule annotation
    Encoded oniPlastid; Chloroplast
    OrganismiGossypium barbadense (Sea-island cotton) (Egyptian cotton)
    Taxonomic identifieri3634 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsMalvalesMalvaceaeMalvoideaeGossypium

    Subcellular locationi

    Plastidchloroplast thylakoid membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

    GO - Cellular componenti

    1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
    2. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Chloroplast, Membrane, Plastid, Thylakoid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 500500NAD(P)H-quinone oxidoreductase chain 4, chloroplasticPRO_0000275909Add
    BLAST

    Keywords - PTMi

    Quinone

    Structurei

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei4 – 2421HelicalUniRule annotationAdd
    BLAST
    Transmembranei31 – 5121HelicalUniRule annotationAdd
    BLAST
    Transmembranei87 – 10721HelicalUniRule annotationAdd
    BLAST
    Transmembranei113 – 13018HelicalUniRule annotationAdd
    BLAST
    Transmembranei134 – 15421HelicalUniRule annotationAdd
    BLAST
    Transmembranei167 – 18721HelicalUniRule annotationAdd
    BLAST
    Transmembranei208 – 22821HelicalUniRule annotationAdd
    BLAST
    Transmembranei242 – 26221HelicalUniRule annotationAdd
    BLAST
    Transmembranei272 – 29221HelicalUniRule annotationAdd
    BLAST
    Transmembranei305 – 32521HelicalUniRule annotationAdd
    BLAST
    Transmembranei330 – 35021HelicalUniRule annotationAdd
    BLAST
    Transmembranei386 – 40621HelicalUniRule annotationAdd
    BLAST
    Transmembranei416 – 43621HelicalUniRule annotationAdd
    BLAST
    Transmembranei462 – 48221HelicalUniRule annotationAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the complex I subunit 4 family.UniRule annotation

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Family and domain databases

    HAMAPiMF_00491. NDH1_NuoM.
    InterProiIPR022997. NADH_Q_OxRdtase_chain4.
    IPR010227. NADH_Q_OxRdtase_chainM/4.
    IPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR003918. NADH_UbQ_OxRdtase.
    [Graphical view]
    PfamiPF00361. Oxidored_q1. 1 hit.
    [Graphical view]
    PRINTSiPR01437. NUOXDRDTASE4.
    TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A0ZZ85-1 [UniParc]FASTAAdd to Basket

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    MNYFPWLTII VFLPISAGSL LFFLPHKGNK LIKWYTICIC ILELLLTTYA    50
    FCYHFRLDDP LIQLAEDYKW INFFDFYWRL GIDGLSIGPI LLTGFITTLA 100
    TLAAWPVTRD SRLFHFLMLA MYSGQIGSFS SRDLLLFFIM WEFELIPVYL 150
    LLSMWGGKKR LYSATKFILY TAGGSVFLLI GVLGLGLYGS NEPTLNFETL 200
    ANQSYPVALE IIFYIGFLIA FAVKSPIIPL HTWLPDTHGE AHYSTCMLLA 250
    GILLKMGAYG LVRINMELLP HAHSIFSPWL IIVGTMQIIY AASTSLGQRN 300
    LKKRIAYSSV SHMGFIIIGI GSITDTGLNG AILQIISHGF IGAALFFLAG 350
    TSYDRMRLVY LDEMGGMAVS IPKIFTMFSI LSMASLALPG MSGFVAELIV 400
    FFGIITSQKY FLMPKILITF VMAIGMILTP IYSLSMSRQM FYGYKLFNAP 450
    SSYFFDSGPR ELFVSISIFL PVIGIGIYPD FVLSLSGEKV ETILYNYFYR 500
    Length:500
    Mass (Da):56,263
    Last modified:January 23, 2007 - v1
    Checksum:iD4AC0EA2333E00C8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP009123 Genomic DNA. Translation: BAF41297.1.
    RefSeqiYP_913236.1. NC_008641.1.

    Genome annotation databases

    GeneIDi4575197.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP009123 Genomic DNA. Translation: BAF41297.1 .
    RefSeqi YP_913236.1. NC_008641.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4575197.

    Family and domain databases

    HAMAPi MF_00491. NDH1_NuoM.
    InterProi IPR022997. NADH_Q_OxRdtase_chain4.
    IPR010227. NADH_Q_OxRdtase_chainM/4.
    IPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR003918. NADH_UbQ_OxRdtase.
    [Graphical view ]
    Pfami PF00361. Oxidored_q1. 1 hit.
    [Graphical view ]
    PRINTSi PR01437. NUOXDRDTASE4.
    TIGRFAMsi TIGR01972. NDH_I_M. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete nucleotide sequence of the cotton (Gossypium barbadense L.) chloroplast genome with a comparative analysis of sequences among 9 dicot plants."
      Ibrahim R.I.H., Azuma J., Sakamoto M.
      Genes Genet. Syst. 81:311-321(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiNU4C_GOSBA
    AccessioniPrimary (citable) accession number: A0ZZ85
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 6, 2007
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3