Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

A0ZZ82 (NU5C_GOSBA) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

EC=1.6.5.-
Alternative name(s):
NAD(P)H dehydrogenase subunit 5
NADH-plastoquinone oxidoreductase subunit 5
Gene names
Name:ndhF
Encoded onPlastid; Chloroplast
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
Taxonomic identifier3634 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsMalvalesMalvaceaeMalvoideaeGossypium

Protein attributes

Sequence length745 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity.

Catalytic activity

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.

Subunit structure

NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus By similarity.

Subcellular location

Plastidchloroplast thylakoid membrane; Multi-pass membrane protein By similarity.

Sequence similarities

Belongs to the complex I subunit 5 family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 745745NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
PRO_0000360936

Regions

Transmembrane9 – 2921Helical; Potential
Transmembrane50 – 7021Helical; Potential
Transmembrane99 – 11921Helical; Potential
Transmembrane135 – 15521Helical; Potential
Transmembrane157 – 17721Helical; Potential
Transmembrane194 – 21421Helical; Potential
Transmembrane229 – 24921Helical; Potential
Transmembrane268 – 28821Helical; Potential
Transmembrane290 – 31021Helical; Potential
Transmembrane337 – 35721Helical; Potential
Transmembrane364 – 38421Helical; Potential
Transmembrane406 – 42621Helical; Potential
Transmembrane435 – 45521Helical; Potential
Transmembrane550 – 57021Helical; Potential
Transmembrane610 – 63021Helical; Potential
Transmembrane724 – 74421Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
A0ZZ82 [UniParc].

Last modified January 23, 2007. Version 1.
Checksum: C12B3AD1FC31897B

FASTA74584,612
        10         20         30         40         50         60 
MEHADQYSWI IPFVPLPIPI LIGMGLLLFP TATKRLLLFP TATKNLRRMW AFPNILLLSI 

        70         80         90        100        110        120 
VMIFSLDLSI QQINGSSIYQ YVWSWTINND FSFEFGYFID SLTSIMSILI TTVGIFVLIY 

       130        140        150        160        170        180 
SDNYMSHDEG YLRFFAYMSL FNTSMLGLVT SCNLIQIYIF WELVGMCSYL LIGFWFTRPA 

       190        200        210        220        230        240 
AANACQKAFV TNRIGDFGLL LGILGFYWIT GSFEFQDLFE IFNNLIYNNE VHFLFVTLCA 

       250        260        270        280        290        300 
SLLFAGAVAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL FPLFIVIPYI 

       310        320        330        340        350        360 
MNLISLIGII TVLLGATLAL AQNDIKRGLA YSTMSQLGYM MLALGMGSYR AALFHLITHA 

       370        380        390        400        410        420 
YSKALLFLAS GSIIHSMEAI VGYSPEKSQN MVFMGGLRKH VPVTQIAFLV GTLSLCGIPP 

       430        440        450        460        470        480 
LACFWSKDEI LSDSWLYSPI FAIIAWSTAG LTAFYMFRIY LLTFEGHLNV HFQKYSGKKS 

       490        500        510        520        530        540 
SSFYSIKLWG KEEQKIINRN FRLFPLLTLT MNNNEQPYTI GGKKEARITI TNFGYKKAFS 

       550        560        570        580        590        600 
YPHESDNTML FPMLILLLFT LFVGAIAIPF NQEGMHLDIL SKLLTPSINL LHQNSNDFED 

       610        620        630        640        650        660 
SYQFFKNATF SVSIACFGIF TAFLLYKPFY SSVQNLNLLN SFVKRGPKRI LLDKMIYLIY 

       670        680        690        700        710        720 
DWSYNRGYID MFYSISLTKG IRGLAELTHF FDRRVIDGIT NGVGITSFFV GESVKYLGGS 

       730        740 
RISFYLLLYL VYVFIFLVIS YFILF 

« Hide

References

[1]"Complete nucleotide sequence of the cotton (Gossypium barbadense L.) chloroplast genome with a comparative analysis of sequences among 9 dicot plants."
Ibrahim R.I.H., Azuma J., Sakamoto M.
Genes Genet. Syst. 81:311-321(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP009123 Genomic DNA. Translation: BAF41294.1.
RefSeqYP_913233.1. NC_008641.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4575199.

Family and domain databases

InterProIPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
[Graphical view]
PfamPF00361. Oxidored_q1. 1 hit.
PF01010. Oxidored_q1_C. 1 hit.
PF00662. Oxidored_q1_N. 1 hit.
[Graphical view]
PRINTSPR01435. NPOXDRDTASE5.
TIGRFAMsTIGR01974. NDH_I_L. 1 hit.
ProtoNetSearch...

Entry information

Entry nameNU5C_GOSBA
AccessionPrimary (citable) accession number: A0ZZ82
Entry history
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 23, 2007
Last modified: May 14, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families