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A0ZZ82

- NU5C_GOSBA

UniProt

A0ZZ82 - NU5C_GOSBA

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Protein

NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

Gene

ndhF

Organism
Gossypium barbadense (Sea-island cotton) (Egyptian cotton)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity).By similarity

Catalytic activityi

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.

GO - Molecular functioni

  1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
  2. quinone binding Source: UniProtKB-KW

GO - Biological processi

  1. ATP synthesis coupled electron transport Source: InterPro
  2. transport Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

Transport

Keywords - Ligandi

NAD, NADP, Plastoquinone

Names & Taxonomyi

Protein namesi
Recommended name:
NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC:1.6.5.-)
Alternative name(s):
NAD(P)H dehydrogenase subunit 5
NADH-plastoquinone oxidoreductase subunit 5
Gene namesi
Name:ndhF
Encoded oniPlastid; Chloroplast
OrganismiGossypium barbadense (Sea-island cotton) (Egyptian cotton)
Taxonomic identifieri3634 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsMalvalesMalvaceaeMalvoideaeGossypium

Subcellular locationi

GO - Cellular componenti

  1. chloroplast Source: UniProtKB-KW
  2. integral component of membrane Source: UniProtKB-KW
  3. thylakoid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 745745NAD(P)H-quinone oxidoreductase subunit 5, chloroplasticPRO_0000360936Add
BLAST

Keywords - PTMi

Quinone

Interactioni

Subunit structurei

NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.By similarity

Structurei

Transmembrane

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei9 – 2921HelicalSequence AnalysisAdd
BLAST
Transmembranei50 – 7021HelicalSequence AnalysisAdd
BLAST
Transmembranei99 – 11921HelicalSequence AnalysisAdd
BLAST
Transmembranei135 – 15521HelicalSequence AnalysisAdd
BLAST
Transmembranei157 – 17721HelicalSequence AnalysisAdd
BLAST
Transmembranei194 – 21421HelicalSequence AnalysisAdd
BLAST
Transmembranei229 – 24921HelicalSequence AnalysisAdd
BLAST
Transmembranei268 – 28821HelicalSequence AnalysisAdd
BLAST
Transmembranei290 – 31021HelicalSequence AnalysisAdd
BLAST
Transmembranei337 – 35721HelicalSequence AnalysisAdd
BLAST
Transmembranei364 – 38421HelicalSequence AnalysisAdd
BLAST
Transmembranei406 – 42621HelicalSequence AnalysisAdd
BLAST
Transmembranei435 – 45521HelicalSequence AnalysisAdd
BLAST
Transmembranei550 – 57021HelicalSequence AnalysisAdd
BLAST
Transmembranei610 – 63021HelicalSequence AnalysisAdd
BLAST
Transmembranei724 – 74421HelicalSequence AnalysisAdd
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the complex I subunit 5 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

InterProiIPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
[Graphical view]
PfamiPF00361. Oxidored_q1. 1 hit.
PF01010. Oxidored_q1_C. 1 hit.
PF00662. Oxidored_q1_N. 1 hit.
[Graphical view]
PRINTSiPR01435. NPOXDRDTASE5.
TIGRFAMsiTIGR01974. NDH_I_L. 1 hit.

Sequencei

Sequence statusi: Complete.

A0ZZ82 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEHADQYSWI IPFVPLPIPI LIGMGLLLFP TATKRLLLFP TATKNLRRMW
60 70 80 90 100
AFPNILLLSI VMIFSLDLSI QQINGSSIYQ YVWSWTINND FSFEFGYFID
110 120 130 140 150
SLTSIMSILI TTVGIFVLIY SDNYMSHDEG YLRFFAYMSL FNTSMLGLVT
160 170 180 190 200
SCNLIQIYIF WELVGMCSYL LIGFWFTRPA AANACQKAFV TNRIGDFGLL
210 220 230 240 250
LGILGFYWIT GSFEFQDLFE IFNNLIYNNE VHFLFVTLCA SLLFAGAVAK
260 270 280 290 300
SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL FPLFIVIPYI
310 320 330 340 350
MNLISLIGII TVLLGATLAL AQNDIKRGLA YSTMSQLGYM MLALGMGSYR
360 370 380 390 400
AALFHLITHA YSKALLFLAS GSIIHSMEAI VGYSPEKSQN MVFMGGLRKH
410 420 430 440 450
VPVTQIAFLV GTLSLCGIPP LACFWSKDEI LSDSWLYSPI FAIIAWSTAG
460 470 480 490 500
LTAFYMFRIY LLTFEGHLNV HFQKYSGKKS SSFYSIKLWG KEEQKIINRN
510 520 530 540 550
FRLFPLLTLT MNNNEQPYTI GGKKEARITI TNFGYKKAFS YPHESDNTML
560 570 580 590 600
FPMLILLLFT LFVGAIAIPF NQEGMHLDIL SKLLTPSINL LHQNSNDFED
610 620 630 640 650
SYQFFKNATF SVSIACFGIF TAFLLYKPFY SSVQNLNLLN SFVKRGPKRI
660 670 680 690 700
LLDKMIYLIY DWSYNRGYID MFYSISLTKG IRGLAELTHF FDRRVIDGIT
710 720 730 740
NGVGITSFFV GESVKYLGGS RISFYLLLYL VYVFIFLVIS YFILF
Length:745
Mass (Da):84,612
Last modified:January 23, 2007 - v1
Checksum:iC12B3AD1FC31897B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP009123 Genomic DNA. Translation: BAF41294.1.
RefSeqiYP_913233.1. NC_008641.1.

Genome annotation databases

GeneIDi4575199.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP009123 Genomic DNA. Translation: BAF41294.1 .
RefSeqi YP_913233.1. NC_008641.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4575199.

Family and domain databases

InterProi IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
[Graphical view ]
Pfami PF00361. Oxidored_q1. 1 hit.
PF01010. Oxidored_q1_C. 1 hit.
PF00662. Oxidored_q1_N. 1 hit.
[Graphical view ]
PRINTSi PR01435. NPOXDRDTASE5.
TIGRFAMsi TIGR01974. NDH_I_L. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete nucleotide sequence of the cotton (Gossypium barbadense L.) chloroplast genome with a comparative analysis of sequences among 9 dicot plants."
    Ibrahim R.I.H., Azuma J., Sakamoto M.
    Genes Genet. Syst. 81:311-321(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiNU5C_GOSBA
AccessioniPrimary (citable) accession number: A0ZZ82
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 23, 2007
Last modified: October 29, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3