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A0ZZ82

- NU5C_GOSBA

UniProt

A0ZZ82 - NU5C_GOSBA

Protein

NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

Gene

ndhF

Organism
Gossypium barbadense (Sea-island cotton) (Egyptian cotton)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity.By similarity

    Catalytic activityi

    NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.

    GO - Molecular functioni

    1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
    2. quinone binding Source: UniProtKB-KW

    GO - Biological processi

    1. ATP synthesis coupled electron transport Source: InterPro
    2. transport Source: UniProtKB-KW

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Biological processi

    Transport

    Keywords - Ligandi

    NAD, NADP, Plastoquinone

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC:1.6.5.-)
    Alternative name(s):
    NAD(P)H dehydrogenase subunit 5
    NADH-plastoquinone oxidoreductase subunit 5
    Gene namesi
    Name:ndhF
    Encoded oniPlastid; Chloroplast
    OrganismiGossypium barbadense (Sea-island cotton) (Egyptian cotton)
    Taxonomic identifieri3634 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsMalvalesMalvaceaeMalvoideaeGossypium

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
    2. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Chloroplast, Membrane, Plastid, Thylakoid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 745745NAD(P)H-quinone oxidoreductase subunit 5, chloroplasticPRO_0000360936Add
    BLAST

    Keywords - PTMi

    Quinone

    Interactioni

    Subunit structurei

    NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.By similarity

    Structurei

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei9 – 2921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei50 – 7021HelicalSequence AnalysisAdd
    BLAST
    Transmembranei99 – 11921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei135 – 15521HelicalSequence AnalysisAdd
    BLAST
    Transmembranei157 – 17721HelicalSequence AnalysisAdd
    BLAST
    Transmembranei194 – 21421HelicalSequence AnalysisAdd
    BLAST
    Transmembranei229 – 24921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei268 – 28821HelicalSequence AnalysisAdd
    BLAST
    Transmembranei290 – 31021HelicalSequence AnalysisAdd
    BLAST
    Transmembranei337 – 35721HelicalSequence AnalysisAdd
    BLAST
    Transmembranei364 – 38421HelicalSequence AnalysisAdd
    BLAST
    Transmembranei406 – 42621HelicalSequence AnalysisAdd
    BLAST
    Transmembranei435 – 45521HelicalSequence AnalysisAdd
    BLAST
    Transmembranei550 – 57021HelicalSequence AnalysisAdd
    BLAST
    Transmembranei610 – 63021HelicalSequence AnalysisAdd
    BLAST
    Transmembranei724 – 74421HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the complex I subunit 5 family.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Family and domain databases

    InterProiIPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
    IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
    IPR003945. NADHpl_OxRdtase_5.
    IPR018393. NADHpl_OxRdtase_5_subgr.
    [Graphical view]
    PfamiPF00361. Oxidored_q1. 1 hit.
    PF01010. Oxidored_q1_C. 1 hit.
    PF00662. Oxidored_q1_N. 1 hit.
    [Graphical view]
    PRINTSiPR01435. NPOXDRDTASE5.
    TIGRFAMsiTIGR01974. NDH_I_L. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A0ZZ82-1 [UniParc]FASTAAdd to Basket

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    MEHADQYSWI IPFVPLPIPI LIGMGLLLFP TATKRLLLFP TATKNLRRMW    50
    AFPNILLLSI VMIFSLDLSI QQINGSSIYQ YVWSWTINND FSFEFGYFID 100
    SLTSIMSILI TTVGIFVLIY SDNYMSHDEG YLRFFAYMSL FNTSMLGLVT 150
    SCNLIQIYIF WELVGMCSYL LIGFWFTRPA AANACQKAFV TNRIGDFGLL 200
    LGILGFYWIT GSFEFQDLFE IFNNLIYNNE VHFLFVTLCA SLLFAGAVAK 250
    SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL FPLFIVIPYI 300
    MNLISLIGII TVLLGATLAL AQNDIKRGLA YSTMSQLGYM MLALGMGSYR 350
    AALFHLITHA YSKALLFLAS GSIIHSMEAI VGYSPEKSQN MVFMGGLRKH 400
    VPVTQIAFLV GTLSLCGIPP LACFWSKDEI LSDSWLYSPI FAIIAWSTAG 450
    LTAFYMFRIY LLTFEGHLNV HFQKYSGKKS SSFYSIKLWG KEEQKIINRN 500
    FRLFPLLTLT MNNNEQPYTI GGKKEARITI TNFGYKKAFS YPHESDNTML 550
    FPMLILLLFT LFVGAIAIPF NQEGMHLDIL SKLLTPSINL LHQNSNDFED 600
    SYQFFKNATF SVSIACFGIF TAFLLYKPFY SSVQNLNLLN SFVKRGPKRI 650
    LLDKMIYLIY DWSYNRGYID MFYSISLTKG IRGLAELTHF FDRRVIDGIT 700
    NGVGITSFFV GESVKYLGGS RISFYLLLYL VYVFIFLVIS YFILF 745
    Length:745
    Mass (Da):84,612
    Last modified:January 23, 2007 - v1
    Checksum:iC12B3AD1FC31897B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP009123 Genomic DNA. Translation: BAF41294.1.
    RefSeqiYP_913233.1. NC_008641.1.

    Genome annotation databases

    GeneIDi4575199.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP009123 Genomic DNA. Translation: BAF41294.1 .
    RefSeqi YP_913233.1. NC_008641.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4575199.

    Family and domain databases

    InterProi IPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
    IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
    IPR003945. NADHpl_OxRdtase_5.
    IPR018393. NADHpl_OxRdtase_5_subgr.
    [Graphical view ]
    Pfami PF00361. Oxidored_q1. 1 hit.
    PF01010. Oxidored_q1_C. 1 hit.
    PF00662. Oxidored_q1_N. 1 hit.
    [Graphical view ]
    PRINTSi PR01435. NPOXDRDTASE5.
    TIGRFAMsi TIGR01974. NDH_I_L. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete nucleotide sequence of the cotton (Gossypium barbadense L.) chloroplast genome with a comparative analysis of sequences among 9 dicot plants."
      Ibrahim R.I.H., Azuma J., Sakamoto M.
      Genes Genet. Syst. 81:311-321(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiNU5C_GOSBA
    AccessioniPrimary (citable) accession number: A0ZZ82
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 20, 2009
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3