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A0T0R4

- RR18_THAPS

UniProt

A0T0R4 - RR18_THAPS

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Protein
30S ribosomal protein S18, chloroplastic
Gene
rps18
Organism
Thalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S18, chloroplastic
Gene namesi
Name:rps18
Encoded oniPlastid; Chloroplast
OrganismiThalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Taxonomic identifieri35128 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira
ProteomesiUP000001449: Chloroplast

Subcellular locationi

GO - Cellular componenti

  1. chloroplast Source: UniProtKB-SubCell
  2. ribosome Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 727230S ribosomal protein S18, chloroplasticUniRule annotation
PRO_0000276898Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.

Structurei

3D structure databases

ProteinModelPortaliA0T0R4.
SMRiA0T0R4. Positions 15-66.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0238.
HOGENOMiHOG000218466.

Family and domain databases

Gene3Di4.10.640.10. 1 hit.
HAMAPiMF_00270. Ribosomal_S18.
InterProiIPR001648. Ribosomal_S18.
IPR018275. Ribosomal_S18_CS.
[Graphical view]
PANTHERiPTHR13479. PTHR13479. 1 hit.
PfamiPF01084. Ribosomal_S18. 1 hit.
[Graphical view]
PRINTSiPR00974. RIBOSOMALS18.
ProDomiPD002239. Ribosomal_S18. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46911. SSF46911. 1 hit.
TIGRFAMsiTIGR00165. S18. 1 hit.
PROSITEiPS00057. RIBOSOMAL_S18. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0T0R4-1 [UniParc]FASTAAdd to Basket

« Hide

MLAQKQKLAP IGINQKIDYK DIDLLKLFIT EQGKILPRRA TGVTVQQQRQ   50
LAKAIKRARI LSLLPFVASN EL 72
Length:72
Mass (Da):8,155
Last modified:January 9, 2007 - v1
Checksum:i310FEF9BD5716BAA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
EF067921 Genomic DNA. Translation: ABK20749.1.
RefSeqiYP_874526.1. NC_008589.1.

Genome annotation databases

GeneIDi4524732.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
EF067921 Genomic DNA. Translation: ABK20749.1 .
RefSeqi YP_874526.1. NC_008589.1.

3D structure databases

ProteinModelPortali A0T0R4.
SMRi A0T0R4. Positions 15-66.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4524732.

Phylogenomic databases

eggNOGi COG0238.
HOGENOMi HOG000218466.

Family and domain databases

Gene3Di 4.10.640.10. 1 hit.
HAMAPi MF_00270. Ribosomal_S18.
InterProi IPR001648. Ribosomal_S18.
IPR018275. Ribosomal_S18_CS.
[Graphical view ]
PANTHERi PTHR13479. PTHR13479. 1 hit.
Pfami PF01084. Ribosomal_S18. 1 hit.
[Graphical view ]
PRINTSi PR00974. RIBOSOMALS18.
ProDomi PD002239. Ribosomal_S18. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF46911. SSF46911. 1 hit.
TIGRFAMsi TIGR00165. S18. 1 hit.
PROSITEi PS00057. RIBOSOMAL_S18. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage."
    Oudot-Le Secq M.-P., Grimwood J., Shapiro H., Armbrust E.V., Bowler C., Green B.R.
    Mol. Genet. Genomics 277:427-439(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCMP1335.

Entry informationi

Entry nameiRR18_THAPS
AccessioniPrimary (citable) accession number: A0T0R4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: January 9, 2007
Last modified: June 11, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi