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A0T0R4

- RR18_THAPS

UniProt

A0T0R4 - RR18_THAPS

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Protein

30S ribosomal protein S18, chloroplastic

Gene

rps18

Organism
Thalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S18, chloroplasticUniRule annotation
Gene namesi
Name:rps18UniRule annotation
Encoded oniPlastid; Chloroplast
OrganismiThalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Taxonomic identifieri35128 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira
ProteomesiUP000001449: Chloroplast

Subcellular locationi

GO - Cellular componenti

  1. chloroplast Source: UniProtKB-HAMAP
  2. ribosome Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 727230S ribosomal protein S18, chloroplasticPRO_0000276898Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.

Structurei

3D structure databases

ProteinModelPortaliA0T0R4.
SMRiA0T0R4. Positions 15-66.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S18P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0238.
HOGENOMiHOG000218466.
InParanoidiA0T0R4.

Family and domain databases

Gene3Di4.10.640.10. 1 hit.
HAMAPiMF_00270. Ribosomal_S18.
InterProiIPR001648. Ribosomal_S18.
IPR018275. Ribosomal_S18_CS.
[Graphical view]
PANTHERiPTHR13479. PTHR13479. 1 hit.
PfamiPF01084. Ribosomal_S18. 1 hit.
[Graphical view]
PRINTSiPR00974. RIBOSOMALS18.
ProDomiPD002239. Ribosomal_S18. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46911. SSF46911. 1 hit.
TIGRFAMsiTIGR00165. S18. 1 hit.
PROSITEiPS00057. RIBOSOMAL_S18. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0T0R4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLAQKQKLAP IGINQKIDYK DIDLLKLFIT EQGKILPRRA TGVTVQQQRQ
60 70
LAKAIKRARI LSLLPFVASN EL
Length:72
Mass (Da):8,155
Last modified:January 9, 2007 - v1
Checksum:i310FEF9BD5716BAA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF067921 Genomic DNA. Translation: ABK20749.1.
RefSeqiYP_874526.1. NC_008589.1.

Genome annotation databases

GeneIDi4524732.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF067921 Genomic DNA. Translation: ABK20749.1 .
RefSeqi YP_874526.1. NC_008589.1.

3D structure databases

ProteinModelPortali A0T0R4.
SMRi A0T0R4. Positions 15-66.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4524732.

Phylogenomic databases

eggNOGi COG0238.
HOGENOMi HOG000218466.
InParanoidi A0T0R4.

Family and domain databases

Gene3Di 4.10.640.10. 1 hit.
HAMAPi MF_00270. Ribosomal_S18.
InterProi IPR001648. Ribosomal_S18.
IPR018275. Ribosomal_S18_CS.
[Graphical view ]
PANTHERi PTHR13479. PTHR13479. 1 hit.
Pfami PF01084. Ribosomal_S18. 1 hit.
[Graphical view ]
PRINTSi PR00974. RIBOSOMALS18.
ProDomi PD002239. Ribosomal_S18. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF46911. SSF46911. 1 hit.
TIGRFAMsi TIGR00165. S18. 1 hit.
PROSITEi PS00057. RIBOSOMAL_S18. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage."
    Oudot-Le Secq M.-P., Grimwood J., Shapiro H., Armbrust E.V., Bowler C., Green B.R.
    Mol. Genet. Genomics 277:427-439(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCMP1335.

Entry informationi

Entry nameiRR18_THAPS
AccessioniPrimary (citable) accession number: A0T0R4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: January 9, 2007
Last modified: October 29, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3