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Protein

30S ribosomal protein S18, chloroplastic

Gene

rps18

Organism
Thalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S18, chloroplasticUniRule annotation
Gene namesi
Name:rps18UniRule annotation
Encoded oniPlastid; Chloroplast
OrganismiThalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Taxonomic identifieri35128 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira
ProteomesiUP000001449 Componenti: Chloroplast

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 727230S ribosomal protein S18, chloroplasticPRO_0000276898Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.

Protein-protein interaction databases

STRINGi35128.Thapsdraft1251.

Structurei

3D structure databases

ProteinModelPortaliA0T0R4.
SMRiA0T0R4. Positions 15-66.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S18P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0238.
HOGENOMiHOG000218466.
InParanoidiA0T0R4.

Family and domain databases

Gene3Di4.10.640.10. 1 hit.
HAMAPiMF_00270. Ribosomal_S18.
InterProiIPR001648. Ribosomal_S18.
IPR018275. Ribosomal_S18_CS.
[Graphical view]
PANTHERiPTHR13479. PTHR13479. 1 hit.
PfamiPF01084. Ribosomal_S18. 1 hit.
[Graphical view]
PRINTSiPR00974. RIBOSOMALS18.
ProDomiPD002239. Ribosomal_S18. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46911. SSF46911. 1 hit.
TIGRFAMsiTIGR00165. S18. 1 hit.
PROSITEiPS00057. RIBOSOMAL_S18. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0T0R4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLAQKQKLAP IGINQKIDYK DIDLLKLFIT EQGKILPRRA TGVTVQQQRQ
60 70
LAKAIKRARI LSLLPFVASN EL
Length:72
Mass (Da):8,155
Last modified:January 9, 2007 - v1
Checksum:i310FEF9BD5716BAA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF067921 Genomic DNA. Translation: ABK20749.1.
RefSeqiYP_874526.1. NC_008589.1.

Genome annotation databases

GeneIDi4524732.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF067921 Genomic DNA. Translation: ABK20749.1.
RefSeqiYP_874526.1. NC_008589.1.

3D structure databases

ProteinModelPortaliA0T0R4.
SMRiA0T0R4. Positions 15-66.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi35128.Thapsdraft1251.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi4524732.

Phylogenomic databases

eggNOGiCOG0238.
HOGENOMiHOG000218466.
InParanoidiA0T0R4.

Family and domain databases

Gene3Di4.10.640.10. 1 hit.
HAMAPiMF_00270. Ribosomal_S18.
InterProiIPR001648. Ribosomal_S18.
IPR018275. Ribosomal_S18_CS.
[Graphical view]
PANTHERiPTHR13479. PTHR13479. 1 hit.
PfamiPF01084. Ribosomal_S18. 1 hit.
[Graphical view]
PRINTSiPR00974. RIBOSOMALS18.
ProDomiPD002239. Ribosomal_S18. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46911. SSF46911. 1 hit.
TIGRFAMsiTIGR00165. S18. 1 hit.
PROSITEiPS00057. RIBOSOMAL_S18. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage."
    Oudot-Le Secq M.-P., Grimwood J., Shapiro H., Armbrust E.V., Bowler C., Green B.R.
    Mol. Genet. Genomics 277:427-439(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCMP1335.

Entry informationi

Entry nameiRR18_THAPS
AccessioniPrimary (citable) accession number: A0T0R4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: January 9, 2007
Last modified: June 24, 2015
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.