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A0T0R4 (RR18_THAPS) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
30S ribosomal protein S18, chloroplastic
Gene names
Name:rps18
Encoded onPlastid; Chloroplast
OrganismThalassiosira pseudonana (Marine diatom) (Cyclotella nana) [Reference proteome]
Taxonomic identifier35128 [NCBI]
Taxonomic lineageEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira

Protein attributes

Sequence length72 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subunit structure

Part of the 30S ribosomal subunit.

Subcellular location

Plastidchloroplast HAMAP-Rule MF_00270.

Sequence similarities

Belongs to the ribosomal protein S18P family.

Ontologies

Keywords
   Cellular componentChloroplast
Plastid
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentchloroplast

Inferred from electronic annotation. Source: UniProtKB-SubCell

ribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 727230S ribosomal protein S18, chloroplastic HAMAP-Rule MF_00270
PRO_0000276898

Sequences

Sequence LengthMass (Da)Tools
A0T0R4 [UniParc].

Last modified January 9, 2007. Version 1.
Checksum: 310FEF9BD5716BAA

FASTA728,155
        10         20         30         40         50         60 
MLAQKQKLAP IGINQKIDYK DIDLLKLFIT EQGKILPRRA TGVTVQQQRQ LAKAIKRARI 

        70 
LSLLPFVASN EL 

« Hide

References

[1]"Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage."
Oudot-Le Secq M.-P., Grimwood J., Shapiro H., Armbrust E.V., Bowler C., Green B.R.
Mol. Genet. Genomics 277:427-439(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCMP1335.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
EF067921 Genomic DNA. Translation: ABK20749.1.
RefSeqYP_874526.1. NC_008589.1.

3D structure databases

ProteinModelPortalA0T0R4.
SMRA0T0R4. Positions 15-66.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsThapsdraft1251; Thapsdraft1251; Thapsdraft1251.
GeneID4524732.

Phylogenomic databases

eggNOGCOG0238.
HOGENOMHOG000218466.
ProtClustDBCHL00077.

Family and domain databases

Gene3D4.10.640.10. 1 hit.
HAMAPMF_00270. Ribosomal_S18.
InterProIPR001648. Ribosomal_S18.
IPR018275. Ribosomal_S18_CS.
[Graphical view]
PANTHERPTHR13479. PTHR13479. 1 hit.
PfamPF01084. Ribosomal_S18. 1 hit.
[Graphical view]
PRINTSPR00974. RIBOSOMALS18.
ProDomPD002239. Ribosomal_S18. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF46911. SSF46911. 1 hit.
TIGRFAMsTIGR00165. S18. 1 hit.
PROSITEPS00057. RIBOSOMAL_S18. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRR18_THAPS
AccessionPrimary (citable) accession number: A0T0R4
Entry history
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: January 9, 2007
Last modified: February 19, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries