Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

A0T0R4

- RR18_THAPS

UniProt

A0T0R4 - RR18_THAPS

Protein

30S ribosomal protein S18, chloroplastic

Gene

rps18

Organism
Thalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S18, chloroplasticUniRule annotation
    Gene namesi
    Name:rps18UniRule annotation
    Encoded oniPlastid; Chloroplast
    OrganismiThalassiosira pseudonana (Marine diatom) (Cyclotella nana)
    Taxonomic identifieri35128 [NCBI]
    Taxonomic lineageiEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira
    ProteomesiUP000001449: Chloroplast

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast Source: UniProtKB-SubCell
    2. ribosome Source: UniProtKB-KW

    Keywords - Cellular componenti

    Chloroplast, Plastid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 727230S ribosomal protein S18, chloroplasticPRO_0000276898Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit.

    Structurei

    3D structure databases

    ProteinModelPortaliA0T0R4.
    SMRiA0T0R4. Positions 15-66.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S18P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0238.
    HOGENOMiHOG000218466.

    Family and domain databases

    Gene3Di4.10.640.10. 1 hit.
    HAMAPiMF_00270. Ribosomal_S18.
    InterProiIPR001648. Ribosomal_S18.
    IPR018275. Ribosomal_S18_CS.
    [Graphical view]
    PANTHERiPTHR13479. PTHR13479. 1 hit.
    PfamiPF01084. Ribosomal_S18. 1 hit.
    [Graphical view]
    PRINTSiPR00974. RIBOSOMALS18.
    ProDomiPD002239. Ribosomal_S18. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF46911. SSF46911. 1 hit.
    TIGRFAMsiTIGR00165. S18. 1 hit.
    PROSITEiPS00057. RIBOSOMAL_S18. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A0T0R4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLAQKQKLAP IGINQKIDYK DIDLLKLFIT EQGKILPRRA TGVTVQQQRQ   50
    LAKAIKRARI LSLLPFVASN EL 72
    Length:72
    Mass (Da):8,155
    Last modified:January 9, 2007 - v1
    Checksum:i310FEF9BD5716BAA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF067921 Genomic DNA. Translation: ABK20749.1.
    RefSeqiYP_874526.1. NC_008589.1.

    Genome annotation databases

    GeneIDi4524732.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF067921 Genomic DNA. Translation: ABK20749.1 .
    RefSeqi YP_874526.1. NC_008589.1.

    3D structure databases

    ProteinModelPortali A0T0R4.
    SMRi A0T0R4. Positions 15-66.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4524732.

    Phylogenomic databases

    eggNOGi COG0238.
    HOGENOMi HOG000218466.

    Family and domain databases

    Gene3Di 4.10.640.10. 1 hit.
    HAMAPi MF_00270. Ribosomal_S18.
    InterProi IPR001648. Ribosomal_S18.
    IPR018275. Ribosomal_S18_CS.
    [Graphical view ]
    PANTHERi PTHR13479. PTHR13479. 1 hit.
    Pfami PF01084. Ribosomal_S18. 1 hit.
    [Graphical view ]
    PRINTSi PR00974. RIBOSOMALS18.
    ProDomi PD002239. Ribosomal_S18. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF46911. SSF46911. 1 hit.
    TIGRFAMsi TIGR00165. S18. 1 hit.
    PROSITEi PS00057. RIBOSOMAL_S18. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage."
      Oudot-Le Secq M.-P., Grimwood J., Shapiro H., Armbrust E.V., Bowler C., Green B.R.
      Mol. Genet. Genomics 277:427-439(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CCMP1335.

    Entry informationi

    Entry nameiRR18_THAPS
    AccessioniPrimary (citable) accession number: A0T0R4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 6, 2007
    Last sequence update: January 9, 2007
    Last modified: October 1, 2014
    This is version 34 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3