Unreviewed, UniProtKB/TrEMBL A0SZW2 (A0SZW2_RAT)

Names and origin

Protein names

Submitted name:
    CD40 ligand CD154 EMBL ABK59325.1
Submitted name:
    CD40 ligand EMBL EDL75129.1

Gene names

Name:	Cd40lg EMBL EDL75129.1
ORF Names:	rCG_39232 EMBL EDL75129.1

Organism

Rattus norvegicus (Rat) EMBL ABK59325.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	260 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

Ontologies

Gene Ontology (GO)
Biological process	B cell differentiation Inferred from electronic annotation. Source: Compara immunoglobulin secretion Inferred from electronic annotation. Source: Compara isotype switching Inferred from electronic annotation. Source: Compara regulation of immunoglobulin secretion Inferred from electronic annotation. Source: Compara
Cellular component	membrane Inferred from electronic annotation. Source: InterPro
Molecular function	tumor necrosis factor receptor binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A0SZW2-1 [UniParc]. Last modified January 9, 2007. Version 1. Checksum: 0D439C746B412EBB	FASTA	260	29,310
	10 20 30 40 50 60 MIETYSQPSP RSVATGLPAS MKIFMYLLTV FLITQMIGSV LFAVYLHRRL DKVEEEASLH 70 80 90 100 110 120 EDFVFVKKLK RCNKGEGSLS LLNCEEMRRQ FEDLVKDISL NKEEKKEKSF EMQRGDEDPQ 130 140 150 160 170 180 IAAHVVSEAN SNAASVLQWA KKGYYTMKSN LVVLENGRQL TVKREGLYYV YTQVTFCSNR 190 200 210 220 230 240 EPLSQRPFIV SLWLKPSSGS ERILLRAANT HSSSKLCEQQ SIHLGGVFEL QAGASVFVNV 250 260 TEASQVIHGI GFSSFGLLKL

References

[1]	"Molecular and functional analysis of a novel recombinant clone of rat (Rattus norvegicus) CD40 ligand (CD40L) gene." Esendagli G., Gunel-Ozcan A., Canpinar H., Guc D. Mol. Biol. Rep. 36:83-89(2009) [PubMed: 17922253] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Sprague-Dawley EMBL ABK59325.1. Tissue: Spleen EMBL ABK59325.1.
[2]	"Gene and alternative splicing annotation with AIR." Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G. Genome Res. 15:54-66(2005) [PubMed: 15632090] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDL75129.1.
[3]	Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDL75129.1.

Cross-references

Sequence databases
EMBLGenBankDDBJ	EF066490 mRNA. Translation: ABK59325.1. CH474106 Genomic DNA. Translation: EDL75129.1.
IPI	IPI00210301.
UniGene	Rn.44218
3D structure databases
SMR	A0SZW2. Positions 115-260.
ModBase	Search...
Protein-protein interaction databases
STRING	A0SZW2.
Genome annotation databases
Ensembl	ENSRNOT00000001162; ENSRNOP00000001162; ENSRNOG00000000871; Rattus norvegicus. [Genome view]
NMPDR	fig|10116.3.peg.32330.
Phylogenomic databases
HOVERGEN	A0SZW2.
OMA	KIFMYLL.
Gene expression databases
Genevestigator	A0SZW2.
Family and domain databases
InterPro	IPR003263. TNF_5. IPR006052. TNF_family. IPR008983. Tumour_necrosis_fac-like. [Graphical view]
Gene3D	G3DSA:2.60.120.40. Tumour_necrosis_fac-like. 1 hit.
Pfam	PF00229. TNF. 1 hit. [Graphical view]
PIRSF	PIRSF016527. TNF_5. 1 hit.
PRINTS	PR01702. CD40LIGAND.
ProDom	PD002012. TNF_subf. 1 hit. [Graphical view] [Entries sharing at least one domain]
SMART	SM00207. TNF. 1 hit. [Graphical view]
PROSITE	PS00251. TNF_1. 1 hit. PS50049. TNF_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A0SZW2_RAT

Accession

Primary (citable) accession number: A0SZW2

Entry history

Integrated into UniProtKB/TrEMBL:	January 9, 2007
Last sequence update:	January 9, 2007
Last modified:	November 3, 2009
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)