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A0R6I8 (A0R6I8_MYCS2) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Transcriptional regulator, TetR family protein EMBL ABK75087.1
Gene names
Ordered Locus Names:MSMEG_6564 EMBL ABK75087.1, MSMEI_6387 EMBL AFP42813.1
OrganismMycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [Reference proteome] [HAMAP] EMBL ABK75087.1
Taxonomic identifier246196 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium

Protein attributes

Sequence length189 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Contains 1 HTH tetR-type DNA-binding domain. RuleBase RU000710

Contains HTH tetR-type DNA-binding domain. SAAS SAAS001647

Sequences

Sequence LengthMass (Da)Tools
A0R6I8 [UniParc].

Last modified January 9, 2007. Version 1.
Checksum: 122895106954AF58

FASTA18920,537
        10         20         30         40         50         60 
MTTAEAPRRR SEKSRVAIVE ATRALLLERG FDGLSIEAVA AKAGVGKQTI YRWWPSRHAL 

        70         80         90        100        110        120 
VADVLLEDAD KILARMPKTD DVTADLASWA GTLAAALTTR RGHAMLKTLM AASLEHEDTA 

       130        140        150        160        170        180 
ARLREGFSRP LIESVRDRLR DEDIDADHAQ AAADALLGAV VNAVLSEGRS YSRQRAETSA 


RIIVAGLRP 

« Hide

References

« Hide 'large scale' references
[1]"ICDS database: interrupted CoDing sequences in prokaryotic genomes."
Perrodou E., Deshayes C., Muller J., Schaeffer C., Van Dorsselaer A., Ripp R., Poch O., Reyrat J.M., Lecompte O.
Nucleic Acids Res. 34:D338-D343(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: MC2 155 EMBL AFP42813.1.
[2]Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M.
Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL ABK75087.1.
[3]"Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?"
Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C., Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.M.
Genome Biol. 8:R20.1-R20.9(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL AFP42813.1.
[4]"Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol."
Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.M., Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O.
Genome Res. 19:128-135(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700084 / mc(2)155 and MC2 155.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000480 Genomic DNA. Translation: ABK75087.1.
CP001663 Genomic DNA. Translation: AFP42813.1.
RefSeqYP_006571108.1. NC_018289.1.
YP_890776.1. NC_008596.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4JKZX-ray1.80A8-189[»]
4JL3X-ray2.50A/B/C/D9-189[»]
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING246196.MSMEG_6564.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABK75087; ABK75087; MSMEG_6564.
AFP42813; AFP42813; MSMEI_6387.
GeneID13425511.
4533773.
KEGGmsg:MSMEI_6387.
msm:MSMEG_6564.
PATRIC18085351. VBIMycSme59918_6388.

Phylogenomic databases

eggNOGCOG1309.
HOGENOMHOG000266637.
OMAACMEHED.
OrthoDBEOG615VJ0.
ProtClustDBCLSK703992.

Enzyme and pathway databases

BioCycMSME246196:GJ4Y-6563-MONOMER.

Family and domain databases

Gene3D1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSPR00455. HTHTETR.
SUPFAMSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA0R6I8_MYCS2
AccessionPrimary (citable) accession number: A0R6I8
Entry history
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: April 16, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)