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Protein
Submitted name:

Transcriptional regulator, TetR family

Gene

MSMEG_6564

Organism
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciMSME246196:GJ4Y-6563-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, TetR familyImported
Submitted name:
Transcriptional regulator, TetR family proteinImported
Gene namesi
Ordered Locus Names:MSMEG_6564Imported, MSMEI_6387Imported
OrganismiMycobacterium smegmatis (strain ATCC 700084 / mc(2)155)Imported
Taxonomic identifieri246196 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacterium
Proteomesi
  • UP000006158 Componenti: Chromosome
  • UP000000757 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi246196.MSMEG_6564.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4JKZX-ray1.80A8-189[»]
4JL3X-ray2.50A/B/C/D9-189[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini12 – 7261HTH tetR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH tetR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000266637.
OMAiACMEHED.
OrthoDBiPOG091H0C34.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF16859. TetR_C_11. 1 hit.
PF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0R6I8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTTAEAPRRR SEKSRVAIVE ATRALLLERG FDGLSIEAVA AKAGVGKQTI
60 70 80 90 100
YRWWPSRHAL VADVLLEDAD KILARMPKTD DVTADLASWA GTLAAALTTR
110 120 130 140 150
RGHAMLKTLM AASLEHEDTA ARLREGFSRP LIESVRDRLR DEDIDADHAQ
160 170 180
AAADALLGAV VNAVLSEGRS YSRQRAETSA RIIVAGLRP
Length:189
Mass (Da):20,537
Last modified:January 9, 2007 - v1
Checksum:i122895106954AF58
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000480 Genomic DNA. Translation: ABK75087.1.
CP001663 Genomic DNA. Translation: AFP42813.1.
RefSeqiWP_011731364.1. NZ_CP009494.1.
YP_890776.1. NC_008596.1.

Genome annotation databases

EnsemblBacteriaiABK75087; ABK75087; MSMEG_6564.
AFP42813; AFP42813; MSMEI_6387.
GeneIDi4533773.
KEGGimsb:LJ00_32445.
msg:MSMEI_6387.
msm:MSMEG_6564.
PATRICi18085351. VBIMycSme59918_6388.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000480 Genomic DNA. Translation: ABK75087.1.
CP001663 Genomic DNA. Translation: AFP42813.1.
RefSeqiWP_011731364.1. NZ_CP009494.1.
YP_890776.1. NC_008596.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4JKZX-ray1.80A8-189[»]
4JL3X-ray2.50A/B/C/D9-189[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi246196.MSMEG_6564.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABK75087; ABK75087; MSMEG_6564.
AFP42813; AFP42813; MSMEI_6387.
GeneIDi4533773.
KEGGimsb:LJ00_32445.
msg:MSMEI_6387.
msm:MSMEG_6564.
PATRICi18085351. VBIMycSme59918_6388.

Phylogenomic databases

HOGENOMiHOG000266637.
OMAiACMEHED.
OrthoDBiPOG091H0C34.

Enzyme and pathway databases

BioCyciMSME246196:GJ4Y-6563-MONOMER.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF16859. TetR_C_11. 1 hit.
PF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiA0R6I8_MYCS2
AccessioniPrimary (citable) accession number: A0R6I8
Entry historyi
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: September 7, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.